RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 LPXNO60711 386 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 LGR5O75473 907 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 BMP1P13497 986 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 HOXC8P31273 242 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 SEMA3FQ13275 785 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 EMSYQ7Z589 1322 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 ZNF654Q8IZM8 581 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 CTCFLQ8NI51 663 aaPredicted RBP25.5■■□□□ 1.67
HDDC3-203ENST00000494993 RAD9AQ99638 391 aa25.5■■□□□ 1.67
HDDC3-203ENST00000494993 RBAK-RBAKDNI3L0D1 243 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 NOP56O00567 594 aaKnown RBP25.49■■□□□ 1.67
HDDC3-203ENST00000494993 DDAH1O94760 285 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 THPOP40225 353 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 IRX6P78412 446 aaPredicted RBP25.49■■□□□ 1.67
HDDC3-203ENST00000494993 NEDD9Q14511 834 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 METTL7BQ6UX53 244 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 ATP6V0A1Q93050 837 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 RRP36Q96EU6 259 aaKnown RBP25.49■■□□□ 1.67
HDDC3-203ENST00000494993 MYL10Q9BUA6 226 aa25.49■■□□□ 1.67
HDDC3-203ENST00000494993 RSPH10B2B2RC85 870 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 SPATA31C2B4DYI2 1134 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 FIBPO43427 364 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 RSPH10BP0C881 870 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 SMIM10L2AP0DMW4 78 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 SMIM10L2BP0DMW5 78 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 KIF5BP33176 963 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 CASC1Q6TDU7 716 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 CYFIP1Q7L576 1253 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 SMARCC2Q8TAQ2 1214 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 MTA3Q9BTC8 594 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 USP26Q9BXU7 913 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 RTEL1Q9NZ71 1219 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 COG5Q9UP83 839 aa25.48■■□□□ 1.67
HDDC3-203ENST00000494993 NLRC5Q86WI3 1866 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 SMARCA1P28370 1054 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 KCNQ1P51787 676 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 USP17L6PQ6QN14 398 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 DBF4BQ8NFT6 615 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 GDPD5Q8WTR4 605 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 CUL5Q93034 780 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 GPR20Q99678 358 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 RNPEPQ9H4A4 650 aa25.47■■□□□ 1.67
HDDC3-203ENST00000494993 LINC01553A4QN01 128 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 PIK3CDO00329 1044 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 TREHO43280 583 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 PRC1O43663 620 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 MKRN4PQ13434 485 aaPredicted RBP25.46■■□□□ 1.67
HDDC3-203ENST00000494993 PCNX4Q63HM2 1172 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 FAM117BQ6P1L5 589 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 TGS1Q96RS0 853 aaKnown RBP25.46■■□□□ 1.67
HDDC3-203ENST00000494993 LZTS2Q9BRK4 669 aa25.46■■□□□ 1.67
HDDC3-203ENST00000494993 SEC63Q9UGP8 760 aaKnown RBP25.46■■□□□ 1.67
HDDC3-203ENST00000494993 MEIS2O14770 477 aa25.45■■□□□ 1.66
HDDC3-203ENST00000494993 ERVK-21P61565 698 aa25.45■■□□□ 1.66
HDDC3-203ENST00000494993 PLEKHG4Q58EX7 1191 aa25.45■■□□□ 1.66
HDDC3-203ENST00000494993 XRRA1Q6P2D8 792 aa25.45■■□□□ 1.66
HDDC3-203ENST00000494993 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.45■■□□□ 1.66
HDDC3-203ENST00000494993 NECAB3Q96P71 396 aaPredicted RBP25.45■■□□□ 1.66
HDDC3-203ENST00000494993 LMCD1Q9NZU5 365 aa25.45■■□□□ 1.66
HDDC3-203ENST00000494993 SH2B2O14492 632 aaPredicted RBP25.44■■□□□ 1.66
HDDC3-203ENST00000494993 CAND2O75155 1236 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 PLEKHA8P1O95397 391 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 AMHP03971 560 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 MCM5P33992 734 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 GNAQP50148 359 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 NFXL1Q6ZNB6 911 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 TRIM50Q86XT4 487 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 TMTC2Q8N394 836 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 TMEM87BQ96K49 555 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 SENP7Q9BQF6 1050 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 SUGCTQ9HAC7 445 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 MTUS1Q9ULD2 1270 aa25.44■■□□□ 1.66
HDDC3-203ENST00000494993 GNAT1P11488 350 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 NLRX1Q86UT6 975 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 MYOCDQ8IZQ8 938 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 SRBD1Q8N5C6 995 aaKnown RBP25.43■■□□□ 1.66
HDDC3-203ENST00000494993 HLA-CQ95604 372 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 LSG1Q9H089 658 aaKnown RBP25.43■■□□□ 1.66
HDDC3-203ENST00000494993 SETD4Q9NVD3 440 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 ZNF215Q9UL58 517 aaPredicted RBP25.43■■□□□ 1.66
HDDC3-203ENST00000494993 TELO2Q9Y4R8 837 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 INSL6Q9Y581 213 aa25.43■■□□□ 1.66
HDDC3-203ENST00000494993 CCDC69A6NI79 296 aa25.42■■□□□ 1.66
HDDC3-203ENST00000494993 UTP14CQ5TAP6 766 aaKnown RBP25.42■■□□□ 1.66
HDDC3-203ENST00000494993 RALGAPA2Q2PPJ7 1873 aa25.42■■□□□ 1.66
HDDC3-203ENST00000494993 CTSHP09668 335 aa25.41■■□□□ 1.66
HDDC3-203ENST00000494993 HTRA4P83105 476 aaPredicted RBP25.41■■□□□ 1.66
HDDC3-203ENST00000494993 SP4Q02446 784 aa25.41■■□□□ 1.66
HDDC3-203ENST00000494993 COL9A3Q14050 684 aaPredicted RBP25.41■■□□□ 1.66
HDDC3-203ENST00000494993 SEPT8Q92599 483 aa25.41■■□□□ 1.66
HDDC3-203ENST00000494993 SLC27A2O14975 620 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 CALM1P0DP23 149 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 CALM2P0DP24 149 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 CALM3P0DP25 149 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 RXRAP19793 462 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 LIFRP42702 1097 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 ADAM17P78536 824 aa25.4■■□□□ 1.66
HDDC3-203ENST00000494993 CMTR1Q8N1G2 835 aaKnown RBP25.4■■□□□ 1.66
HDDC3-203ENST00000494993 GIMAP8Q8ND71 665 aaPredicted RBP25.4■■□□□ 1.66
HDDC3-203ENST00000494993 GPRASP2Q96D09 838 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms