RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 ZNF396Q96N95 335 aaPredicted RBP15.24■□□□□ 0.03
MSH6-208ENST00000493177 PRO3102Q9H379 93 aa15.24■□□□□ 0.03
MSH6-208ENST00000493177 MYCLP12524 364 aaPredicted RBP15.23■□□□□ 0.03
MSH6-208ENST00000493177 PTGS1P23219 599 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 RILPL1Q5EBL4 403 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 TTC38Q5R3I4 469 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 CCSAPQ6IQ19 270 aaPredicted RBP15.23■□□□□ 0.03
MSH6-208ENST00000493177 SH3RF1Q7Z6J0 888 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 NEK8Q86SG6 692 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 BADQ92934 168 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 TNPO1Q92973 898 aaKnown RBP15.23■□□□□ 0.03
MSH6-208ENST00000493177 IWS1Q96ST2 819 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 PXMP2Q9NR77 195 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 POLR3EQ9NVU0 708 aa15.23■□□□□ 0.03
MSH6-208ENST00000493177 CEP290O15078 2479 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 ARVCFO00192 962 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 CCNT1O60563 726 aaKnown RBP15.22■□□□□ 0.03
MSH6-208ENST00000493177 EDNRBP24530 442 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 SREBF1P36956 1147 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 TRAPPC10P48553 1259 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 ARHGAP4P98171 946 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 CEBPZQ03701 1054 aaKnown RBP15.22■□□□□ 0.03
MSH6-208ENST00000493177 DNM1Q05193 864 aaKnown RBP15.22■□□□□ 0.03
MSH6-208ENST00000493177 NBR1Q14596 966 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 ZNF174Q15697 407 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 TMEM63BQ5T3F8 832 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 TOX2Q96NM4 488 aa15.22■□□□□ 0.03
MSH6-208ENST00000493177 RBM47A0AV96 593 aaKnown RBP15.21■□□□□ 0.03
MSH6-208ENST00000493177 TRIM43BA6NCK2 446 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 CCND2P30279 289 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 CHMP4BP1P59074 171 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 KRT85P78386 507 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 ITGA7Q13683 1181 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 PGM5Q15124 567 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 COPS5Q92905 334 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 TRIM43Q96BQ3 446 aaPredicted RBP15.21■□□□□ 0.03
MSH6-208ENST00000493177 CHAMP1Q96JM3 812 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 NAP1L4Q99733 375 aaKnown RBP15.21■□□□□ 0.03
MSH6-208ENST00000493177 PDCD2LQ9BRP1 358 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 TFIP11Q9UBB9 837 aaKnown RBP15.21■□□□□ 0.03
MSH6-208ENST00000493177 MRVI1Q9Y6F6 885 aa15.21■□□□□ 0.03
MSH6-208ENST00000493177 CTAGE5O15320 804 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 GH1P01241 217 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 NR3C2P08235 984 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 MCM7P33993 719 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 TOB1P50616 345 aaPredicted RBP15.2■□□□□ 0.02
MSH6-208ENST00000493177 USP11P51784 963 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 NKX3-2P78367 333 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 FAAP100Q0VG06 881 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 FAM47CQ5HY64 1035 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 ANKRD33Q7Z3H0 272 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 IL31RAQ8NI17 732 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 ZFP91Q96JP5 570 aaPredicted RBP15.2■□□□□ 0.02
MSH6-208ENST00000493177 USP28Q96RU2 1077 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 PPP1R12CQ9BZL4 782 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 FTOQ9C0B1 505 aaKnown RBP eCLIP15.2■□□□□ 0.02
MSH6-208ENST00000493177 CFAP45Q9UL16 551 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 PCDHB6Q9Y5E3 794 aa15.2■□□□□ 0.02
MSH6-208ENST00000493177 FRMPD4Q14CM0 1322 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 WNT7AO00755 349 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 KIAA0355O15063 1070 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 MARCH6O60337 910 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 EIF3JO75822 258 aaKnown RBP15.19■□□□□ 0.02
MSH6-208ENST00000493177 TDP2O95551 362 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 CYP3A4P08684 503 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 PSMC6P62333 389 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 FPGSQ05932 587 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 STK38Q15208 465 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 SF3A1Q15459 793 aaKnown RBP15.19■□□□□ 0.02
MSH6-208ENST00000493177 LY6KQ17RY6 165 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 PCNX4Q63HM2 1172 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 ATL3Q6DD88 541 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 MTG1Q9BT17 334 aaPredicted RBP15.19■□□□□ 0.02
MSH6-208ENST00000493177 SEZ6LQ9BYH1 1024 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 RTEL1Q9NZ71 1219 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 DDX25Q9UHL0 483 aaKnown RBP15.19■□□□□ 0.02
MSH6-208ENST00000493177 CEP131Q9UPN4 1083 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 CLIC4Q9Y696 253 aa15.19■□□□□ 0.02
MSH6-208ENST00000493177 MYH15Q9Y2K3 1946 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 FIBPO43427 364 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 KPNA6O60684 536 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 GCFC2P16383 781 aaKnown RBP15.18■□□□□ 0.02
MSH6-208ENST00000493177 PRR16Q569H4 304 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 XRRA1Q6P2D8 792 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 FAM126BQ8IXS8 530 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 LRCH3Q96II8 777 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 GBP4Q96PP9 640 aa15.18■□□□□ 0.02
MSH6-208ENST00000493177 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.18■□□□□ 0.02
MSH6-208ENST00000493177 TRIOBPQ9H2D6 2365 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 SOX1O00570 391 aaPredicted RBP15.17■□□□□ 0.02
MSH6-208ENST00000493177 EDIL3O43854 480 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 NEMFO60524 1076 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 ARIH2O95376 493 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 BAG4O95429 457 aaKnown RBP15.17■□□□□ 0.02
MSH6-208ENST00000493177 BMP15O95972 392 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 TIMP1P01033 207 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 CIITAP33076 1130 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 CDK7P50613 346 aa15.17■□□□□ 0.02
MSH6-208ENST00000493177 PURAQ00577 322 aaKnown RBP15.17■□□□□ 0.02
MSH6-208ENST00000493177 LRIT3Q3SXY7 679 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms