RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SMARCC2Q8TAQ2 1214 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 PANK1Q8TE04 598 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 CPA5Q8WXQ8 436 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 TOE1Q96GM8 510 aaKnown RBP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 SMOC1Q9H4F8 434 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 ZCCHC4Q9H5U6 513 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 CATSPERZQ9NTU4 200 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 USP35Q9P2H5 1018 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 NDOR1Q9UHB4 597 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 FBXL7Q9UJT9 491 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 ZNF652Q9Y2D9 606 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 MRPS23Q9Y3D9 190 aaKnown RBP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 TRAF6Q9Y4K3 522 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 ZNF608Q9ULD9 1512 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-208ENST00000490788 TOP2BQ02880 1626 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 ARNTLO00327 626 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 CAPNS1P04632 268 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 ATF2P15336 505 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 BMP7P18075 431 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 CTSWP56202 376 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 NTRK3Q16288 839 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 CCDC144BQ3MJ40 725 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 C2orf27AQ580R0 203 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 CYP4F22Q6NT55 531 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 FAM126BQ8IXS8 530 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 SP8Q8IXZ3 490 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 TMEFF1Q8IYR6 380 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 PIP4K2CQ8TBX8 421 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 DACT3Q96B18 629 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-208ENST00000490788 ZBTB8AQ96BR9 441 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 MAGEB10Q96LZ2 347 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-208ENST00000490788 LNPKQ9C0E8 428 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 SLC6A20Q9NP91 592 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 PPARGC1AQ9UBK2 798 aaKnown RBP3.2□□□□□ -1.9
HMGB1-208ENST00000490788 SFMBT1Q9UHJ3 866 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 DSEQ9UL01 958 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 ATAD2BQ9ULI0 1458 aa3.2□□□□□ -1.9
HMGB1-208ENST00000490788 SLC27A2O14975 620 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 CYP7B1O75881 506 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 INHBBP09529 407 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 SRGAP2CP0DJJ0 459 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 COL6A2P12110 1019 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 IGFBP6P24592 240 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-208ENST00000490788 STAT5AP42229 794 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 CRY1Q16526 586 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 VMACQ2NL98 169 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 EMC4Q5J8M3 183 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 FOXB2Q5VYV0 432 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 OTOP3Q7RTS5 596 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 MIB1Q86YT6 1006 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 NLGN4XQ8N0W4 816 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 TTLL6Q8N841 843 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 FBXW5Q969U6 566 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 EXOC2Q96KP1 924 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 CLIC6Q96NY7 704 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 IPPKQ9H8X2 491 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 DTLQ9NZJ0 730 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 NTMQ9P121 344 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 PCDHA9Q9Y5H5 950 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 PCDHA8Q9Y5H6 950 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 PTCH2Q9Y6C5 1203 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 HMGXB3Q12766 1538 aa3.19□□□□□ -1.9
HMGB1-208ENST00000490788 MED1Q15648 1581 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-208ENST00000490788 CADPSQ9ULU8 1353 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 TCRBV5S2A0A599 114 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 TADA3O75528 432 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 CRTAMO95727 393 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 C8BP07358 591 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 KRT15P19012 456 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 FBLN1P23142 703 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 KCNC1P48547 511 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 DNM2P50570 870 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 HSPA2P54652 639 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 GRIN1Q05586 938 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 SMAD4Q13485 552 aaKnown RBP3.18□□□□□ -1.9
HMGB1-208ENST00000490788 PRAMEF18Q5VWM3 479 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 ERICH6BQ5W0A0 696 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 VASNQ6EMK4 673 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-208ENST00000490788 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-208ENST00000490788 LINC01356Q8N9X3 169 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 KYQ8NBH2 561 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 ARRDC4Q8NCT1 418 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 FNIP1Q8TF40 1166 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 WRNIP1Q96S55 665 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 TMEM209Q96SK2 561 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 MRPL4Q9BYD3 311 aaKnown RBP3.18□□□□□ -1.9
HMGB1-208ENST00000490788 USP40Q9NVE5 1235 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 ASH2LQ9UBL3 628 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 PLA2G2DQ9UNK4 145 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 ASXL2Q76L83 1435 aa3.18□□□□□ -1.9
HMGB1-208ENST00000490788 BAZ1BQ9UIG0 1483 aaKnown RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 B4E1Z4 1266 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 FBXO21O94952 628 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 PYGMP11217 842 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 HOXA5P20719 270 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 FLT3P36888 993 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 SARSP49591 514 aaKnown RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 GJA9P57773 515 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms