RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 AEBP2Q6ZN18 517 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-208ENST00000490788 CHIC1Q5VXU3 224 aa13.02□□□□□ -0.33
HMGB1-208ENST00000490788 POTEDQ86YR6 584 aa12.49□□□□□ -0.41
HMGB1-208ENST00000490788 SENP3Q9H4L4 574 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-208ENST00000490788 PHF23Q9BUL5 403 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-208ENST00000490788 FOXD1Q16676 465 aa11.28□□□□□ -0.6
HMGB1-208ENST00000490788 MSH5O43196 834 aa11.1□□□□□ -0.63
HMGB1-208ENST00000490788 PIAS4Q8N2W9 510 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-208ENST00000490788 CACNB1Q02641 598 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-208ENST00000490788 PLPPR3Q6T4P5 718 aa9.83□□□□□ -0.84
HMGB1-208ENST00000490788 PPP6R1Q9UPN7 881 aa9.67□□□□□ -0.86
HMGB1-208ENST00000490788 ADRA2BP18089 450 aa9.61□□□□□ -0.87
HMGB1-208ENST00000490788 POTEHQ6S545 545 aa9.6□□□□□ -0.87
HMGB1-208ENST00000490788 DMRT2Q9Y5R5 561 aa9.39□□□□□ -0.91
HMGB1-208ENST00000490788 RNF39Q9H2S5 420 aa9.31□□□□□ -0.92
HMGB1-208ENST00000490788 C1QBPQ07021 282 aaKnown RBP9.18□□□□□ -0.94
HMGB1-208ENST00000490788 MAPK8IP2Q13387 824 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-208ENST00000490788 SCAF1Q9H7N4 1312 aaKnown RBP8.97□□□□□ -0.97
HMGB1-208ENST00000490788 DCAF8L1A6NGE4 600 aa8.94□□□□□ -0.98
HMGB1-208ENST00000490788 DNAJC5BQ9UF47 199 aa8.72□□□□□ -1.01
HMGB1-208ENST00000490788 HOXD11P31277 338 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-208ENST00000490788 PPP4R3CPQ6ZMV5 832 aa8.57□□□□□ -1.04
HMGB1-208ENST00000490788 SP7Q8TDD2 431 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-208ENST00000490788 CNKSR2Q8WXI2 1034 aa8.47□□□□□ -1.05
HMGB1-208ENST00000490788 RNF216Q9NWF9 866 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-208ENST00000490788 DSG3P32926 999 aa8.34□□□□□ -1.07
HMGB1-208ENST00000490788 PLSCR2Q9NRY7 297 aa8.27□□□□□ -1.09
HMGB1-208ENST00000490788 NCBP3Q53F19 620 aaKnown RBP8.25□□□□□ -1.09
HMGB1-208ENST00000490788 CHRDL2Q6WN34 429 aa8.24□□□□□ -1.09
HMGB1-208ENST00000490788 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.18□□□□□ -1.14e-8■□□□□ 10.6
HMGB1-208ENST00000490788 CAPN15O75808 1086 aa8.1□□□□□ -1.11
HMGB1-208ENST00000490788 RBM42Q9BTD8 480 aaKnown RBP8.1□□□□□ -1.11
HMGB1-208ENST00000490788 NPM3O75607 178 aaKnown RBP8.07□□□□□ -1.12
HMGB1-208ENST00000490788 SPINK5Q9NQ38 1064 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-208ENST00000490788 KCNA4P22459 653 aa7.99□□□□□ -1.13
HMGB1-208ENST00000490788 LHX8Q68G74 356 aa7.96□□□□□ -1.14
HMGB1-208ENST00000490788 HAX1O00165 279 aa7.92□□□□□ -1.14
HMGB1-208ENST00000490788 U3KPZ7 1027 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-208ENST00000490788 PIP4P2Q8N4L2 257 aa7.79□□□□□ -1.16
HMGB1-208ENST00000490788 ZNF219Q9P2Y4 722 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-208ENST00000490788 ABCB7O75027 752 aa7.75□□□□□ -1.17
HMGB1-208ENST00000490788 APLP2Q06481 763 aa7.75□□□□□ -1.17
HMGB1-208ENST00000490788 SLC4A2P04920 1241 aa7.74□□□□□ -1.17
HMGB1-208ENST00000490788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.71□□□□□ -1.18
HMGB1-208ENST00000490788 HNRNPUL2Q1KMD3 747 aaKnown RBP7.71□□□□□ -1.18
HMGB1-208ENST00000490788 TRHP20396 242 aaPredicted RBP7.69□□□□□ -1.18
HMGB1-208ENST00000490788 EVX2Q03828 476 aa7.66□□□□□ -1.18
HMGB1-208ENST00000490788 AKT1S1Q96B36 256 aa7.65□□□□□ -1.18
HMGB1-208ENST00000490788 SLC4A1APQ9BWU0 796 aaKnown RBP7.65□□□□□ -1.18
HMGB1-208ENST00000490788 SAMD1Q6SPF0 538 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-208ENST00000490788 PCDH10Q9P2E7 1040 aa7.64□□□□□ -1.19
HMGB1-208ENST00000490788 FXR2P51116 673 aaKnown RBP eCLIP7.62□□□□□ -1.19
HMGB1-208ENST00000490788 POTEMA6NI47 508 aa7.55□□□□□ -1.2
HMGB1-208ENST00000490788 GABBR2O75899 941 aa7.52□□□□□ -1.21
HMGB1-208ENST00000490788 REM2Q8IYK8 340 aaPredicted RBP7.5□□□□□ -1.21
HMGB1-208ENST00000490788 MYCNP04198 464 aaPredicted RBP7.49□□□□□ -1.21
HMGB1-208ENST00000490788 POTEGQ6S5H5 508 aa7.48□□□□□ -1.21
HMGB1-208ENST00000490788 POLA2Q14181 598 aa7.43□□□□□ -1.22
HMGB1-208ENST00000490788 PITPNM1O00562 1244 aa7.42□□□□□ -1.22
HMGB1-208ENST00000490788 EHMT2Q96KQ7 1210 aa7.42□□□□□ -1.22
HMGB1-208ENST00000490788 C19orf67A6NJJ6 358 aa7.41□□□□□ -1.22
HMGB1-208ENST00000490788 FOXD4L1Q9NU39 408 aa7.39□□□□□ -1.23
HMGB1-208ENST00000490788 ZBTB12Q9Y330 459 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-208ENST00000490788 POTEIP0CG38 1075 aa7.31□□□□□ -1.24
HMGB1-208ENST00000490788 ZBTB22O15209 634 aa7.29□□□□□ -1.24
HMGB1-208ENST00000490788 CSRNP3Q8WYN3 585 aa7.27□□□□□ -1.25
HMGB1-208ENST00000490788 ATF5Q9Y2D1 282 aaPredicted RBP7.27□□□□□ -1.25
HMGB1-208ENST00000490788 CLCN6P51797 869 aa7.26□□□□□ -1.25
HMGB1-208ENST00000490788 OTUD5Q96G74 571 aa7.26□□□□□ -1.25
HMGB1-208ENST00000490788 PRKAR2AP13861 404 aaKnown RBP7.22□□□□□ -1.25
HMGB1-208ENST00000490788 ATXN8OSP0DMR3 200 aa7.19□□□□□ -1.26
HMGB1-208ENST00000490788 OSCARQ8IYS5 282 aa7.17□□□□□ -1.26
HMGB1-208ENST00000490788 DCBLD2Q96PD2 775 aa7.12□□□□□ -1.27
HMGB1-208ENST00000490788 SPDYE2BA6NHP3 402 aa7.08□□□□□ -1.28
HMGB1-208ENST00000490788 SPDYE6P0CI01 402 aa7.08□□□□□ -1.28
HMGB1-208ENST00000490788 SPDYE2Q495Y8 402 aa7.08□□□□□ -1.28
HMGB1-208ENST00000490788 FBLN2P98095 1184 aa7.07□□□□□ -1.28
HMGB1-208ENST00000490788 LCE2DQ5TA82 110 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-208ENST00000490788 POTEB2H3BUK9 544 aa7.02□□□□□ -1.29
HMGB1-208ENST00000490788 SPDYE1Q8NFV5 336 aaPredicted RBP6.98□□□□□ -1.29
HMGB1-208ENST00000490788 CDAN1Q8IWY9 1227 aa6.96□□□□□ -1.3
HMGB1-208ENST00000490788 MKRN4PQ13434 485 aaPredicted RBP6.95□□□□□ -1.3
HMGB1-208ENST00000490788 ZNF692Q9BU19 519 aaPredicted RBP6.95□□□□□ -1.3
HMGB1-208ENST00000490788 SSUH2Q9Y2M2 353 aa6.95□□□□□ -1.3
HMGB1-208ENST00000490788 CD44P16070 742 aaKnown RBP6.94□□□□□ -1.3
HMGB1-208ENST00000490788 MAMSTRQ6ZN01 415 aa6.93□□□□□ -1.3
HMGB1-208ENST00000490788 MMRN1Q13201 1228 aa6.92□□□□□ -1.3
HMGB1-208ENST00000490788 FAM163AQ96GL9 167 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-208ENST00000490788 CLEC11AQ9Y240 323 aa6.91□□□□□ -1.3
HMGB1-208ENST00000490788 ZNF579Q8NAF0 562 aaKnown RBP6.84□□□□□ -1.31
HMGB1-208ENST00000490788 CHADLQ6NUI6 762 aa6.83□□□□□ -1.32
HMGB1-208ENST00000490788 PRR29P0C7W0 189 aa6.82□□□□□ -1.32
HMGB1-208ENST00000490788 PABPN1Q86U42 306 aaKnown RBP eCLIP6.82□□□□□ -1.32
HMGB1-208ENST00000490788 SPNS2Q8IVW8 549 aa6.82□□□□□ -1.32
HMGB1-208ENST00000490788 SCUBE2Q9NQ36 999 aa6.79□□□□□ -1.32
HMGB1-208ENST00000490788 POTEJP0CG39 1038 aa6.74□□□□□ -1.33
HMGB1-208ENST00000490788 GALR2O43603 387 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-208ENST00000490788 FARP1Q9Y4F1 1045 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-208ENST00000490788 C7P10643 843 aa6.71□□□□□ -1.34
HMGB1-208ENST00000490788 METRNQ9UJH8 293 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms