RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 ICAM3P32942 547 aa21.28■■□□□ 1
HDAC6-231ENST00000488905 KCNQ1P51787 676 aa21.28■■□□□ 1
HDAC6-231ENST00000488905 MAP4K1Q92918 833 aa21.28■■□□□ 1
HDAC6-231ENST00000488905 RAD9AQ99638 391 aa21.28■■□□□ 1
HDAC6-231ENST00000488905 SPZ1Q9BXG8 430 aa21.28■■□□□ 1
HDAC6-231ENST00000488905 TUT1Q9H6E5 874 aaKnown RBP21.28■■□□□ 1
HDAC6-231ENST00000488905 DDAH1O94760 285 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 SMIM10L2AP0DMW4 78 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 SMIM10L2BP0DMW5 78 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 BMP1P13497 986 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 THPOP40225 353 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 SEMA3FQ13275 785 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 METTL7BQ6UX53 244 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 ZNF654Q8IZM8 581 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 CTCFLQ8NI51 663 aaPredicted RBP21.27■■□□□ 1
HDAC6-231ENST00000488905 ATP6V0A1Q93050 837 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 MAP3K14Q99558 947 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 BCAS3Q9H6U6 928 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 LY9Q9HBG7 655 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 COG5Q9UP83 839 aa21.27■■□□□ 1
HDAC6-231ENST00000488905 RBM8AQ9Y5S9 174 aaKnown RBP21.27■■□□□ 1
HDAC6-231ENST00000488905 RSPH10B2B2RC85 870 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 FIBPO43427 364 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 RSPH10BP0C881 870 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 KIF5BP33176 963 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 NEDD9Q14511 834 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 RRP36Q96EU6 259 aaKnown RBP21.26■□□□□ 0.99
HDAC6-231ENST00000488905 NECAB3Q96P71 396 aaPredicted RBP21.26■□□□□ 0.99
HDAC6-231ENST00000488905 MYL10Q9BUA6 226 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 RALGAPA2Q2PPJ7 1873 aa21.26■□□□□ 0.99
HDAC6-231ENST00000488905 LINC01553A4QN01 128 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 SPATA31C2B4DYI2 1134 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 MKRN4PQ13434 485 aaPredicted RBP21.25■□□□□ 0.99
HDAC6-231ENST00000488905 FAM117BQ6P1L5 589 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 CYFIP1Q7L576 1253 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 DBF4BQ8NFT6 615 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 TGS1Q96RS0 853 aaKnown RBP21.25■□□□□ 0.99
HDAC6-231ENST00000488905 GPR20Q99678 358 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 USP26Q9BXU7 913 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 SEC63Q9UGP8 760 aaKnown RBP21.25■□□□□ 0.99
HDAC6-231ENST00000488905 MTUS1Q9ULD2 1270 aa21.25■□□□□ 0.99
HDAC6-231ENST00000488905 COL4A6Q14031 1691 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 PIK3CDO00329 1044 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 TREHO43280 583 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 ERVK-21P61565 698 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 IRX6P78412 446 aaPredicted RBP21.24■□□□□ 0.99
HDAC6-231ENST00000488905 PCNX4Q63HM2 1172 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 USP17L6PQ6QN14 398 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 CASC1Q6TDU7 716 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.24■□□□□ 0.99
HDAC6-231ENST00000488905 TRIM50Q86XT4 487 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 SMARCC2Q8TAQ2 1214 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 CUL5Q93034 780 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 MTA3Q9BTC8 594 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 RNPEPQ9H4A4 650 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 RTEL1Q9NZ71 1219 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 LMCD1Q9NZU5 365 aa21.24■□□□□ 0.99
HDAC6-231ENST00000488905 PRC1O43663 620 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 CAND2O75155 1236 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 AMHP03971 560 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 SMARCA1P28370 1054 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 PLEKHG4Q58EX7 1191 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 HLA-CQ95604 372 aa21.23■□□□□ 0.99
HDAC6-231ENST00000488905 ZNF215Q9UL58 517 aaPredicted RBP21.23■□□□□ 0.99
HDAC6-231ENST00000488905 ATG2AQ2TAZ0 1938 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 SH2B2O14492 632 aaPredicted RBP21.22■□□□□ 0.99
HDAC6-231ENST00000488905 MEIS2O14770 477 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 PLEKHA8P1O95397 391 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 CTSHP09668 335 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 XRRA1Q6P2D8 792 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 MYOCDQ8IZQ8 938 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 SENP7Q9BQF6 1050 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 LZTS2Q9BRK4 669 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 SUGCTQ9HAC7 445 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 INSL6Q9Y581 213 aa21.22■□□□□ 0.99
HDAC6-231ENST00000488905 GNAT1P11488 350 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 COL9A1P20849 921 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 MCM5P33992 734 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 GNAQP50148 359 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 HTRA4P83105 476 aaPredicted RBP21.21■□□□□ 0.99
HDAC6-231ENST00000488905 SP4Q02446 784 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 NFXL1Q6ZNB6 911 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 SETD4Q9NVD3 440 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 TELO2Q9Y4R8 837 aa21.21■□□□□ 0.99
HDAC6-231ENST00000488905 CCDC69A6NI79 296 aa21.2■□□□□ 0.98
HDAC6-231ENST00000488905 UTP14CQ5TAP6 766 aaKnown RBP21.2■□□□□ 0.98
HDAC6-231ENST00000488905 NLRX1Q86UT6 975 aa21.2■□□□□ 0.98
HDAC6-231ENST00000488905 SRBD1Q8N5C6 995 aaKnown RBP21.2■□□□□ 0.98
HDAC6-231ENST00000488905 LMBR1Q8WVP7 490 aa21.2■□□□□ 0.98
HDAC6-231ENST00000488905 SEPT8Q92599 483 aa21.2■□□□□ 0.98
HDAC6-231ENST00000488905 TMEM87BQ96K49 555 aa21.2■□□□□ 0.98
HDAC6-231ENST00000488905 LSG1Q9H089 658 aaKnown RBP21.2■□□□□ 0.98
HDAC6-231ENST00000488905 LOXHD1Q8IVV2 1947 aa21.19■□□□□ 0.98
HDAC6-231ENST00000488905 RXRAP19793 462 aa21.19■□□□□ 0.98
HDAC6-231ENST00000488905 ADAM17P78536 824 aa21.19■□□□□ 0.98
HDAC6-231ENST00000488905 ARHGAP4P98171 946 aa21.19■□□□□ 0.98
HDAC6-231ENST00000488905 COL9A3Q14050 684 aaPredicted RBP21.19■□□□□ 0.98
HDAC6-231ENST00000488905 TMTC2Q8N394 836 aa21.19■□□□□ 0.98
HDAC6-231ENST00000488905 GIMAP8Q8ND71 665 aaPredicted RBP21.19■□□□□ 0.98
HDAC6-231ENST00000488905 SP7Q8TDD2 431 aaPredicted RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms