RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 IGHA2P01877 340 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 TGFB3P10600 412 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 GCFC2P16383 781 aaKnown RBP11.69□□□□□ -0.54
SKA1-204ENST00000488454 ATP2B1P20020 1258 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MRPS9P82933 396 aaKnown RBP11.69□□□□□ -0.54
SKA1-204ENST00000488454 TRIM32Q13049 653 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MTMR1Q13613 665 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 TTLL4Q14679 1199 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 PADI6Q6TGC4 694 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 BRAPQ7Z569 592 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 LAPTM4BQ86VI4 370 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 TTC13Q8NBP0 860 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 SCFD2Q8WU76 684 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 TNFRSF25Q93038 417 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 IPO9Q96P70 1041 aaKnown RBP11.69□□□□□ -0.54
SKA1-204ENST00000488454 WDR11Q9BZH6 1224 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 JADE2Q9NQC1 790 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MTMR6Q9Y217 621 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MRVI1Q9Y6F6 885 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MGAMO43451 1857 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 PLXNB2O15031 1838 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 ZNF236Q9UL36 1845 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 MEIS1O00470 390 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 SEPT4O43236 478 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 FIBPO43427 364 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 MSCO60682 206 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 ZNF865P0CJ78 1059 aaPredicted RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 ZSCAN22P10073 491 aaPredicted RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 TXNP10599 105 aaKnown RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 CYBAP13498 195 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 AKR1A1P14550 325 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 ITGB5P18084 799 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 CIITAP33076 1130 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 TRAPPC10P48553 1259 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 NUCB2P80303 420 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 TNFAIP2Q03169 654 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 CCDC144BQ3MJ40 725 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 PRR16Q569H4 304 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 RILPL1Q5EBL4 403 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 EARS2Q5JPH6 523 aaKnown RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 MAP3K21Q5TCX8 1036 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 FOXD4L5Q5VV16 416 aaPredicted RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 TAPT1Q6NXT6 567 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 NIPA1Q7RTP0 329 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 FERMT3Q86UX7 667 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 PLA2G4DQ86XP0 818 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 FOXD4L4Q8WXT5 416 aaPredicted RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 GPRASP2Q96D09 838 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 INPP4AQ96PE3 977 aaPredicted RBP11.68□□□□□ -0.54
SKA1-204ENST00000488454 PDGFCQ9NRA1 345 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 UBIAD1Q9Y5Z9 338 aa11.68□□□□□ -0.54
SKA1-204ENST00000488454 DOCK3Q8IZD9 2030 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 CYP3A7-CYP3A51PA0A087WV96 503 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 RBM47A0AV96 593 aaKnown RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 SPATA31C2B4DYI2 1134 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 KIF28PB7ZC32 967 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 C3orf80F5H4A9 247 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 NKRFO15226 690 aaKnown RBP eCLIP11.67□□□□□ -0.54
SKA1-204ENST00000488454 BAG4O95429 457 aaKnown RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 RARBP10826 455 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 CYP3A7P24462 503 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 CCND3P30281 292 aaPredicted RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 ICAM3P32942 547 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 ADCYAP1R1P41586 468 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 SETQ01105 290 aaPredicted RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 TTC38Q5R3I4 469 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 PPP4R3AQ6IN85 833 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 MOXD1Q6UVY6 613 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 GIMAP8Q8ND71 665 aaPredicted RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 TRPV1Q8NER1 839 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 CRYGNQ8WXF5 182 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 ARMC5Q96C12 935 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 KATNBL1Q9H079 304 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 AP5M1Q9H0R1 490 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 RNF208Q9H0X6 261 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 SPC25Q9HBM1 224 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 DDX25Q9UHL0 483 aaKnown RBP11.67□□□□□ -0.54
SKA1-204ENST00000488454 TCEAL9Q9UHQ7 104 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 ZSWIM8A7E2V4 1837 aa11.67□□□□□ -0.54
SKA1-204ENST00000488454 ZNFX1Q9P2E3 1918 aaKnown RBP11.66□□□□□ -0.54
SKA1-204ENST00000488454 FAM86B1E9PN63 330 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 TDP2O95551 362 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 FAM86B2P0C5J1 330 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 CCL5P13501 91 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 MCM7P33993 719 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 NEDD9Q14511 834 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 ZNF174Q15697 407 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 LY6KQ17RY6 165 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 Q4G0T1 1027 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 DUSP28Q4G0W2 176 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 DHX37Q8IY37 1157 aaKnown RBP11.66□□□□□ -0.54
SKA1-204ENST00000488454 CYP2W1Q8TAV3 490 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 WNT2BQ93097 391 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 ZNF333Q96JL9 665 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 SDF4Q9BRK5 362 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 ZNF577Q9BSK1 485 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.66□□□□□ -0.54
SKA1-204ENST00000488454 UNC93B1Q9H1C4 597 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 MLXIPQ9HAP2 919 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 KCNH7Q9NS40 1196 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms