RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LRG1P02750 347 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 LTFP02788 710 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 CNR2P34972 360 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 SARSP49591 514 aaKnown RBP5.15□□□□□ -1.59
VPS50-216ENST00000484954 IFRD2Q12894 506 aaPredicted RBP5.15□□□□□ -1.59
VPS50-216ENST00000484954 SERINC3Q13530 473 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 RASGRF1Q13972 1273 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 MTERF2Q49AM1 385 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 FAM209AQ5JX71 171 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 PRR31Q5SQ13 230 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 STYK1Q6J9G0 422 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 TEPPQ6URK8 271 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 LRRC47Q8N1G4 583 aaKnown RBP5.15□□□□□ -1.59
VPS50-216ENST00000484954 KYQ8NBH2 561 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 DCAF4Q8WV16 495 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 ZSWIM3Q96MP5 696 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 KCNJ15Q99712 375 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 YIPF4Q9BSR8 244 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 MRIQ9BWK5 157 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 DTLQ9NZJ0 730 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 NTMQ9P121 344 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 MYOTQ9UBF9 498 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 PPP1R1BQ9UD71 204 aaPredicted RBP5.15□□□□□ -1.59
VPS50-216ENST00000484954 TELO2Q9Y4R8 837 aa5.15□□□□□ -1.59
VPS50-216ENST00000484954 U2SURPO15042 1029 aaKnown RBP5.14□□□□□ -1.59
VPS50-216ENST00000484954 NKRFO15226 690 aaKnown RBP eCLIP5.14□□□□□ -1.59
VPS50-216ENST00000484954 FAM153BP0C7A2 387 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 GRK2P25098 689 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 GRK3P35626 688 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 GRIN1Q05586 938 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 SSRP1Q08945 709 aaKnown RBP5.14□□□□□ -1.59
VPS50-216ENST00000484954 RASA3Q14644 834 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 RSPO2Q6UXX9 243 aaPredicted RBP5.14□□□□□ -1.59
VPS50-216ENST00000484954 ZC3H18Q86VM9 953 aaKnown RBP5.14□□□□□ -1.59
VPS50-216ENST00000484954 ADAMTS17Q8TE56 1095 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 CLEC4DQ8WXI8 215 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 EXOC2Q96KP1 924 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 CCDC113Q9H0I3 377 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 SLC6A20Q9NP91 592 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 ASH2LQ9UBL3 628 aa5.14□□□□□ -1.59
VPS50-216ENST00000484954 SMARCA5O60264 1052 aaPredicted RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 C6orf222P0C671 652 aaPredicted RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 RPL13P26373 211 aaKnown RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 GPR85P60893 370 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 NKX3-2P78367 333 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 RBM10P98175 930 aaKnown RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 CHRNA2Q15822 529 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 PHF19Q5T6S3 580 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 TMC5Q6UXY8 1006 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 TTLL7Q6ZT98 887 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 OTOP3Q7RTS5 596 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 PROSER1Q86XN7 944 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 ZNF669Q96BR6 464 aaPredicted RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 TOE1Q96GM8 510 aaKnown RBP5.13□□□□□ -1.59
VPS50-216ENST00000484954 SMOC1Q9H4F8 434 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 IPPKQ9H8X2 491 aa5.13□□□□□ -1.59
VPS50-216ENST00000484954 TCRBV5S4A2TA0A5A2 114 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 DDX3XO00571 662 aaKnown RBP eCLIP5.12□□□□□ -1.59
VPS50-216ENST00000484954 SLPIP03973 132 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 SOD2P04179 222 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 C6P13671 934 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 KIZQ2M2Z5 673 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 HABP4Q5JVS0 413 aaKnown RBP5.12□□□□□ -1.59
VPS50-216ENST00000484954 NBPF6Q5VWK0 638 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 CPZQ66K79 652 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 MCTP2Q6DN12 878 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 ZFPM1Q8IX07 1006 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 IFNL3Q8IZI9 196 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 ZBTB38Q8NAP3 1195 aaPredicted RBP5.12□□□□□ -1.59
VPS50-216ENST00000484954 NBPF4Q96M43 638 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 C8orf49Q96NF6 230 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 LNPKQ9C0E8 428 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 SNTG2Q9NY99 539 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 SIRPGQ9P1W8 387 aa5.12□□□□□ -1.59
VPS50-216ENST00000484954 TRBV23-1A0A0A0MS06 115 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 KRIT1O00522 736 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 ITGB3P05106 788 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 GNAT1P11488 350 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 ZNF20P17024 532 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 MLLT6P55198 1093 aaPredicted RBP5.11□□□□□ -1.59
VPS50-216ENST00000484954 GJA9P57773 515 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 RBL2Q08999 1139 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 TUSC3Q13454 348 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 RGL3Q3MIN7 710 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 TTLL6Q8N841 843 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.11□□□□□ -1.59
VPS50-216ENST00000484954 SH3RF2Q8TEC5 729 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 ZCCHC14Q8WYQ9 949 aaKnown RBP5.11□□□□□ -1.59
VPS50-216ENST00000484954 LOXL4Q96JB6 756 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 DEPDC7Q96QD5 511 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 CDC6Q99741 560 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 ZFYVE21Q9BQ24 234 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 KRTAP3-1Q9BYR8 98 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 CD244Q9BZW8 370 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 KDM2BQ8NHM5 1336 aa5.11□□□□□ -1.59
VPS50-216ENST00000484954 ZNF28P17035 718 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 GDF5P43026 501 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 CRB2Q5IJ48 1285 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 CYP4F22Q6NT55 531 aa5.1□□□□□ -1.59
VPS50-216ENST00000484954 SCUBE1Q8IWY4 988 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms