RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SPPL2CQ8IUH8 684 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 IFNL3Q8IZI9 196 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 SPICE1Q8N0Z3 855 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 POU5F2Q8N7G0 328 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 ANKS4BQ8N8V4 417 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 CCDC89Q8N998 374 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 TMEM52Q8NDY8 209 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 GSTCDQ8NEC7 633 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 FAM168AQ92567 244 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 NINJ1Q92982 152 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 ERP27Q96DN0 273 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 KRTAP9-4Q9BYQ2 154 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 PRDM7Q9NQW5 492 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 NOL7Q9UMY1 257 aaKnown RBP5.05□□□□□ -1.6
VPS41-212ENST00000482217 CD2APQ9Y5K6 639 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 PPP2R3BQ9Y5P8 575 aa5.05□□□□□ -1.6
VPS41-212ENST00000482217 A0A1W2PQ45 241 aaPredicted RBP5.04□□□□□ -1.6
VPS41-212ENST00000482217 A0A1W2PQY0 241 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 FADS2P1A8MWK0 482 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 PRPF3O43395 683 aaKnown RBP5.04□□□□□ -1.6
VPS41-212ENST00000482217 RAPGEF3O95398 923 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 IGHDP01880 384 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 APPP05067 770 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 YBX3P16989 372 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS41-212ENST00000482217 GTF2A2P52657 109 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 GPR85P60893 370 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 RALGPS1Q5JS13 557 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 OGFOD2Q6N063 350 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 PDXDC1Q6P996 788 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 KRT26Q7Z3Y9 468 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 ZSWIM9Q86XI8 627 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 DDX42Q86XP3 938 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS41-212ENST00000482217 CCDC103Q8IW40 242 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 OXR1Q8N573 874 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 MSL3Q8N5Y2 521 aaKnown RBP5.04□□□□□ -1.6
VPS41-212ENST00000482217 TEX19Q8NA77 164 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 PDZD8Q8NEN9 1154 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS41-212ENST00000482217 HHIPL1Q96JK4 782 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 ADAMTS10Q9H324 1103 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 INTS7Q9NVH2 962 aaKnown RBP5.04□□□□□ -1.6
VPS41-212ENST00000482217 FAM53CQ9NYF3 392 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 CLIC5Q9NZA1 410 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 LUZP4Q9P127 313 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 TMEFF2Q9UIK5 374 aaPredicted RBP5.04□□□□□ -1.6
VPS41-212ENST00000482217 HDAC9Q9UKV0 1011 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 DAAM1Q9Y4D1 1078 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 CARMIL2Q6F5E8 1435 aa5.04□□□□□ -1.6
VPS41-212ENST00000482217 WASHC2CQ9Y4E1 1318 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 BICDL2A1A5D9 508 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 BLACEA4D250 179 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 FITM1A5D6W6 292 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 WTIPA6NIX2 430 aaPredicted RBP5.03□□□□□ -1.6
VPS41-212ENST00000482217 ARNTLO00327 626 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 MYO1BO43795 1136 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 MYL3P08590 195 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 RAC2P15153 192 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 CEBPAP49715 358 aaPredicted RBP5.03□□□□□ -1.6
VPS41-212ENST00000482217 RAB27AP51159 221 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 EPHB1P54762 984 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 CORO7P57737 925 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 NEXNQ0ZGT2 675 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 LAPTM5Q13571 262 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 CBX2Q14781 532 aaPredicted RBP5.03□□□□□ -1.6
VPS41-212ENST00000482217 NR0B2Q15466 257 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 KCNMB1Q16558 191 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 C21orf62-AS1Q17RA5 79 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 SLC4A10Q6U841 1118 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 SLCO6A1Q86UG4 719 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 ZSCAN30Q86W11 494 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 NIM1KQ8IY84 436 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 MYO1HQ8N1T3 1032 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 NLGN2Q8NFZ4 835 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 MFSD3Q96ES6 412 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 CLUHP3Q96NS8 147 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 PHF20Q9BVI0 1012 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 SLC52A2Q9HAB3 445 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 TRIM39Q9HCM9 518 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 EBF1Q9UH73 591 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 NDOR1Q9UHB4 597 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 POLG2Q9UHN1 485 aa5.03□□□□□ -1.6
VPS41-212ENST00000482217 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.03□□□□□ -1.6
VPS41-212ENST00000482217 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.02□□□□□ -1.61
VPS41-212ENST00000482217 C7orf72A4D263 438 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 NPHS1O60500 1241 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 RTP1P59025 263 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 INF2Q27J81 1249 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 GLIPR1L2Q4G1C9 344 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 TM4SF20Q53R12 229 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 GALNT18Q6P9A2 607 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 KCNT2Q6UVM3 1135 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 BRAPQ7Z569 592 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 CPNE8Q86YQ8 564 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 RCBTB1Q8NDN9 531 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 SLC7A14Q8TBB6 771 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 MAGEB10Q96LZ2 347 aaPredicted RBP5.02□□□□□ -1.61
VPS41-212ENST00000482217 CWC25Q9NXE8 425 aaPredicted RBP5.02□□□□□ -1.61
VPS41-212ENST00000482217 ASAP1Q9ULH1 1129 aa5.02□□□□□ -1.61
VPS41-212ENST00000482217 TIMM13Q9Y5L4 95 aaPredicted RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms