RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 KCNA2P16389 499 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 UBA7P41226 1012 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 TXKP42681 527 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 CEBPZQ03701 1054 aaKnown RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 SPIRE1Q08AE8 756 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 SEMA3FQ13275 785 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 ACVR2BQ13705 512 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 LAMC2Q13753 1193 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 EPHA7Q15375 998 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 PKN2Q16513 984 aaKnown RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 HYIQ5T013 277 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 LRCH2Q5VUJ6 765 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 RESP18Q5W5W9 173 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 KRT79Q5XKE5 535 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 KANK3Q6NY19 840 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 SLAIN1Q8ND83 568 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 NPLOC4Q8TAT6 608 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 CYP2W1Q8TAV3 490 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 TIGD1Q96MW7 591 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 POLR3CQ9BUI4 534 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 KATNBL1Q9H079 304 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 TUFT1Q9NNX1 390 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 LRWD1Q9UFC0 647 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 CCDC39Q9UFE4 941 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 DDX41Q9UJV9 622 aaKnown RBP9.3□□□□□ -0.92
SYNE1-225ENST00000481502 TCHHQ07283 1943 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 PLXNB2O15031 1838 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 KDM3AQ9Y4C1 1321 aa9.3□□□□□ -0.92
SYNE1-225ENST00000481502 VWA3AA6NCI4 1184 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 WDR64B1ANS9 1081 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MSCO60682 206 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 LYPLA2O95372 231 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MYL1P05976 194 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 ARP10275 920 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 RPA1P27694 616 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 CTGFP29279 349 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MARCKSP29966 332 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 SLC26A2P50443 739 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 UBXN2AP68543 259 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 NKX3-2P78367 333 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 NBR1Q14596 966 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 FOXD4L6Q3SYB3 417 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 DUSP28Q4G0W2 176 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 TAPT1Q6NXT6 567 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 METTL7BQ6UX53 244 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 FOXD4L3Q6VB84 417 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MRPS27Q92552 414 aaKnown RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 CALML4Q96GE6 196 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 PURBQ96QR8 312 aaKnown RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 HSD17B14Q9BPX1 270 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 ANP32EQ9BTT0 268 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 FTOQ9C0B1 505 aaKnown RBP eCLIP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 LRRC27Q9C0I9 530 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 CSRNP2Q9H175 543 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MAGEF1Q9HAY2 307 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 JPH1Q9HDC5 661 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-225ENST00000481502 VAV3Q9UKW4 847 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 FAM184BQ9ULE4 1060 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 HPSEQ9Y251 543 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 PPME1Q9Y570 386 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MRVI1Q9Y6F6 885 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 LCTP09848 1927 aa9.29□□□□□ -0.92
SYNE1-225ENST00000481502 MGAMO43451 1857 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 DOCK3Q8IZD9 2030 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 PPFIA4O75335 1185 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 GH1P01241 217 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 HMGCRP04035 888 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 P4HBP07237 508 aaKnown RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 ZNF865P0CJ78 1059 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 TXNP10599 105 aaKnown RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 AKR1A1P14550 325 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 CYP2B6P20813 491 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 TECP42680 631 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 PRKCZQ05513 592 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 FAM160A1Q05DH4 1040 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 NFKBIBQ15653 356 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 KLHL40Q2TBA0 621 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 BRDTQ58F21 947 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 CELF3Q5SZQ8 465 aaKnown RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 MAP3K21Q5TCX8 1036 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 SHC4Q6S5L8 630 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 CCDC73Q6ZRK6 1079 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 IQUBQ8NA54 791 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 CD99L2Q8TCZ2 262 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 RAET1EQ8TD07 263 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 SYAP1Q96A49 352 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 SLC9A2Q9UBY0 812 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 STK17AQ9UEE5 414 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 HOOK1Q9UJC3 728 aaKnown RBP9.28□□□□□ -0.92
SYNE1-225ENST00000481502 PCDHA10Q9Y5I2 948 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 PLXNA1Q9UIW2 1896 aa9.28□□□□□ -0.92
SYNE1-225ENST00000481502 IGKV6D-21A0A0A0MT36 114 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 SEPT4O43236 478 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 ADCY3O60266 1144 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 KPNA6O60684 536 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 ATP9AO75110 1047 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 FARP2O94887 1054 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-225ENST00000481502 PSAPP07602 524 aa9.27□□□□□ -0.93
SYNE1-225ENST00000481502 HOXD8P13378 290 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-225ENST00000481502 UBA1P22314 1058 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms