RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 RTEL1Q9NZ71 1219 aa15.3■□□□□ 0.04
VCL-205ENST00000478896 SEC63Q9UGP8 760 aaKnown RBP15.3■□□□□ 0.04
VCL-205ENST00000478896 ZNF215Q9UL58 517 aaPredicted RBP15.3■□□□□ 0.04
VCL-205ENST00000478896 CHD7Q9P2D1 2997 aa15.3■□□□□ 0.04
VCL-205ENST00000478896 MUC3AQ02505 3323 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 FRMPD4Q14CM0 1322 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 LINC01553A4QN01 128 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 FIBPO43427 364 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 CTSHP09668 335 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 SP4Q02446 784 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 CASC1Q6TDU7 716 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 METTL7BQ6UX53 244 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.29■□□□□ 0.043e-7■■■■■ 30.2
VCL-205ENST00000478896 CYFIP1Q7L576 1253 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 DBF4BQ8NFT6 615 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 RRP36Q96EU6 259 aaKnown RBP15.29■□□□□ 0.04
VCL-205ENST00000478896 MYL10Q9BUA6 226 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 USP26Q9BXU7 913 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 SUGCTQ9HAC7 445 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 LMCD1Q9NZU5 365 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 INSL6Q9Y581 213 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 CHD9Q3L8U1 2897 aa15.29■□□□□ 0.04
VCL-205ENST00000478896 RBAK-RBAKDNI3L0D1 243 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 SGSM2O43147 1006 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 TREHO43280 583 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 DDAH1O94760 285 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 GNAT1P11488 350 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 ICAM3P32942 547 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 KIF5BP33176 963 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 ERVK-21P61565 698 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 MRPS9P82933 396 aaKnown RBP15.28■□□□□ 0.04
VCL-205ENST00000478896 UTP14CQ5TAP6 766 aaKnown RBP15.28■□□□□ 0.04
VCL-205ENST00000478896 NFXL1Q6ZNB6 911 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 SEPT8Q92599 483 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 INPP4AQ96PE3 977 aaPredicted RBP15.28■□□□□ 0.04
VCL-205ENST00000478896 RNPEPQ9H4A4 650 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 SUPT16HQ9Y5B9 1047 aaKnown RBP15.28■□□□□ 0.04
VCL-205ENST00000478896 TAF6LQ9Y6J9 622 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 TTC28Q96AY4 2481 aa15.28■□□□□ 0.04
VCL-205ENST00000478896 KAT6AQ92794 2004 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 CAND2O75155 1236 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 ANTXR2P58335 489 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 PLEKHG4Q58EX7 1191 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 USP17L6PQ6QN14 398 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 NLRX1Q86UT6 975 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 TRIM50Q86XT4 487 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 MB21D2Q8IYB1 491 aaPredicted RBP15.27■□□□□ 0.04
VCL-205ENST00000478896 ZNF654Q8IZM8 581 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 FBXO22Q8NEZ5 403 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 YME1L1Q96TA2 773 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 GPR20Q99678 358 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 SPZ1Q9BXG8 430 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 C1QTNF1Q9BXJ1 281 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 BCAS3Q9H6U6 928 aa15.27■□□□□ 0.04
VCL-205ENST00000478896 RBM8AQ9Y5S9 174 aaKnown RBP15.27■□□□□ 0.04
VCL-205ENST00000478896 NLRC5Q86WI3 1866 aa15.27■□□□□ 0.03
VCL-205ENST00000478896 CCDC69A6NI79 296 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 SPATA31C2B4DYI2 1134 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 ARHGAP4P98171 946 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 SEMA3FQ13275 785 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 PCNX4Q63HM2 1172 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 IGDCC4Q8TDY8 1250 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 C17orf80Q9BSJ5 609 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 LY9Q9HBG7 655 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 SETD4Q9NVD3 440 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 RAPGEFL1Q9UHV5 662 aa15.26■□□□□ 0.03
VCL-205ENST00000478896 UPP2O95045 317 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 HOXC8P31273 242 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 GNAQP50148 359 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 MAP4K1Q92918 833 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 MAP3K14Q99558 947 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 LZTS2Q9BRK4 669 aa15.25■□□□□ 0.03
VCL-205ENST00000478896 PRC1O43663 620 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 PLEKHA8P1O95397 391 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 RXRAP19793 462 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 IRX6P78412 446 aaPredicted RBP15.24■□□□□ 0.03
VCL-205ENST00000478896 HTRA4P83105 476 aaPredicted RBP15.24■□□□□ 0.03
VCL-205ENST00000478896 PTPROQ16827 1216 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 XRRA1Q6P2D8 792 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 GIMAP8Q8ND71 665 aaPredicted RBP15.24■□□□□ 0.03
VCL-205ENST00000478896 LMBR1Q8WVP7 490 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 APBB2Q92870 758 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 SAMD11Q96NU1 681 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 SENP7Q9BQF6 1050 aa15.24■□□□□ 0.03
VCL-205ENST00000478896 IFIH1Q9BYX4 1025 aaKnown RBP15.24■□□□□ 0.03
VCL-205ENST00000478896 UBE2ZQ9H832 354 aaPredicted RBP15.24■□□□□ 0.03
VCL-205ENST00000478896 RALGAPA2Q2PPJ7 1873 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 PIK3CDO00329 1044 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 MEIS2O14770 477 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 SMARCA1P28370 1054 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 MCM5P33992 734 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 TCF7P36402 384 aaPredicted RBP15.23■□□□□ 0.03
VCL-205ENST00000478896 MKRN4PQ13434 485 aaPredicted RBP15.23■□□□□ 0.03
VCL-205ENST00000478896 TMTC2Q8N394 836 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 SP7Q8TDD2 431 aaPredicted RBP15.23■□□□□ 0.03
VCL-205ENST00000478896 TOP1MTQ969P6 601 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 CDHR1Q96JP9 859 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 TMEM87BQ96K49 555 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 MTA3Q9BTC8 594 aa15.23■□□□□ 0.03
VCL-205ENST00000478896 TELO2Q9Y4R8 837 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms