RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 SMIM10L2BP0DMW5 78 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 UBA1P22314 1058 aaKnown RBP23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 HYAL1Q12794 435 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 MCMDC2Q4G0Z9 681 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 ESR2Q92731 530 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 APBB2Q92870 758 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 ZKSCAN3Q9BRR0 538 aa23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 RNF41Q9H4P4 317 aaPredicted RBP23.61■■□□□ 1.37
PDLIM1-202ENST00000477757 CCDC171Q6TFL3 1326 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 TREHO43280 583 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 SORBS3O60504 671 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 RB1P06400 928 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 LINC00271P0C7V0 271 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 DLX2Q07687 328 aaPredicted RBP23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 SMAD4Q13485 552 aaKnown RBP23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 CLUL1Q15846 466 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 ZNF589Q86UQ0 364 aaPredicted RBP23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 RNF135Q8IUD6 432 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 FIBCD1Q8N539 461 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 PRSS33Q8NF86 280 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 PHOX2BQ99453 314 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 LAMA4Q16363 1823 aa23.6■■□□□ 1.37
PDLIM1-202ENST00000477757 H3BRB1 525 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 TBX10O75333 385 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 NT5C2P49902 561 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 EDAQ92838 391 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 IL17RAQ96F46 866 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 TUT1Q9H6E5 874 aaKnown RBP23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 JMJD4Q9H9V9 463 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 RWDD3Q9Y3V2 267 aa23.59■■□□□ 1.37
PDLIM1-202ENST00000477757 CFAP54Q96N23 3096 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 GRM6O15303 877 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 DHX16O60231 1041 aaKnown RBP23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 LGALS2P05162 132 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 TGFB3P10600 412 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 MYCLP12524 364 aaPredicted RBP23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 SP2Q02086 613 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 STOX1Q6ZVD7 989 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 BMP8AQ7Z5Y6 402 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 VSIG10LQ86VR7 867 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 TICAM2Q86XR7 235 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 IL31RAQ8NI17 732 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 KAT14Q9H8E8 782 aa23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 RC3H2Q9HBD1 1191 aaKnown RBP23.58■■□□□ 1.37
PDLIM1-202ENST00000477757 ADGRA3Q8IWK6 1321 aa23.58■■□□□ 1.36
PDLIM1-202ENST00000477757 BMPR1AP36894 532 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 PTPN5P54829 565 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 PGM5Q15124 567 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 CCDC178Q5BJE1 867 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 IQCA1Q86XH1 822 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 RNPEPQ9H4A4 650 aa23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 MAP3K20Q9NYL2 800 aaKnown RBP23.57■■□□□ 1.36
PDLIM1-202ENST00000477757 STXBP3O00186 592 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 MMP1P03956 469 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 FAM26DQ5JW98 314 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 CLP1Q92989 425 aaKnown RBP23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 AMNQ9BXJ7 453 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 MLXIPQ9HAP2 919 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 CD207Q9UJ71 328 aa23.56■■□□□ 1.36
PDLIM1-202ENST00000477757 PARP1P09874 1014 aaKnown RBP23.55■■□□□ 1.36
PDLIM1-202ENST00000477757 NMIQ13287 307 aaPredicted RBP23.55■■□□□ 1.36
PDLIM1-202ENST00000477757 GPKOWQ92917 476 aaPredicted RBP eCLIP23.55■■□□□ 1.36
PDLIM1-202ENST00000477757 PCDHB15Q9Y5E8 787 aa23.55■■□□□ 1.36
PDLIM1-202ENST00000477757 ST18O60284 1047 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 KDM4AO75164 1064 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 GNAT1P11488 350 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 GTF2F1P35269 517 aaKnown RBP eCLIP23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 PKN1Q16512 942 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 SAMD3Q8N6K7 520 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 ENAHQ8N8S7 591 aaPredicted RBP23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 PRRX2Q99811 253 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 VAT1LQ9HCJ6 419 aa23.54■■□□□ 1.36
PDLIM1-202ENST00000477757 TMEM221A6NGB7 291 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 M0R296 226 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 LINC01565O15544 149 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 PPP1R11O60927 126 aaPredicted RBP23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 CCND2P30279 289 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 IER5LQ5T953 404 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 TRIM67Q6ZTA4 783 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 MSLNLQ96KJ4 702 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 ZSCAN10Q96SZ4 725 aaPredicted RBP23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 USP26Q9BXU7 913 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 SETD4Q9NVD3 440 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 ZDBF2Q9HCK1 2354 aa23.53■■□□□ 1.36
PDLIM1-202ENST00000477757 KMT2EQ8IZD2 1858 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 NOP56O00567 594 aaKnown RBP23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 EYA4O95677 639 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 HOXA13P31271 388 aaPredicted RBP23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 PDE1AP54750 535 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 ADAM17P78536 824 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 ADAM15Q13444 863 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 LMBR1Q8WVP7 490 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 MTMR8Q96EF0 704 aa23.52■■□□□ 1.36
PDLIM1-202ENST00000477757 TRIM6-TRIM34B2RNG4 842 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 ZNF213O14771 459 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 PBXIP1Q96AQ6 731 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 PLVAPQ9BX97 442 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 IGFLR1Q9H665 355 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 BCAS3Q9H6U6 928 aa23.51■■□□□ 1.35
PDLIM1-202ENST00000477757 CACNA1HO95180 2353 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms