RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MRPS9P82933 396 aaKnown RBP14.38□□□□□ -0.11
VPS13D-205ENST00000473099 MTMR1Q13613 665 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 NCAPH2Q6IBW4 605 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 RGMBQ6NW40 437 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 POTEEQ6S8J3 1075 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 RASAL3Q86YV0 1011 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 MLKLQ8NB16 471 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 GPRC5AQ8NFJ5 357 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 IL31RAQ8NI17 732 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 CYP2W1Q8TAV3 490 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 DNAJC25Q9H1X3 360 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 TUFT1Q9NNX1 390 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 CREBZFQ9NS37 354 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 KCNH7Q9NS40 1196 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 MORF4L1Q9UBU8 362 aa14.38□□□□□ -0.11
VPS13D-205ENST00000473099 GOLGA6L19H0YKK7 550 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 FOXN1O15353 648 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 PRR29P0C7W0 189 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 XRCC6P12956 609 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS13D-205ENST00000473099 MORC3Q14149 939 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 KCTD2Q14681 263 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 KCNB1Q14721 858 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 STXBP2Q15833 593 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 CNNM4Q6P4Q7 775 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 OTOP1Q7RTM1 612 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 SAPCD2Q86UD0 394 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 RNF214Q8ND24 703 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 RAD54LQ92698 747 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 HHIPL1Q96JK4 782 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 INPP4AQ96PE3 977 aaPredicted RBP14.37□□□□□ -0.11
VPS13D-205ENST00000473099 PNMA5Q96PV4 448 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 C7orf25Q9BPX7 421 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 AGO4Q9HCK5 861 aaKnown RBP14.37□□□□□ -0.11
VPS13D-205ENST00000473099 MAN1B1Q9UKM7 699 aa14.37□□□□□ -0.11
VPS13D-205ENST00000473099 SMTNL1A8MU46 457 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 BECN2A8MW95 431 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 BIN1O00499 593 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 ARP10275 920 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 FCER1AP12319 257 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 PPP1R2P41236 205 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 ALDH5A1P51649 535 aaPredicted RBP14.36□□□□□ -0.11
VPS13D-205ENST00000473099 TPM4P67936 248 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 EPHA7Q15375 998 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 B3GNT9Q6UX72 402 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 GRAMD1CQ8IYS0 662 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 FAM133AQ8N9E0 248 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 RDM1Q8NG50 284 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 ERCC4Q92889 916 aaPredicted RBP14.36□□□□□ -0.11
VPS13D-205ENST00000473099 CCDC102AQ96A19 550 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 MMP19Q99542 508 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 CBX8Q9HC52 389 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 TXNRD2Q9NNW7 524 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 BMP2KQ9NSY1 1161 aaPredicted RBP14.36□□□□□ -0.11
VPS13D-205ENST00000473099 BLOC1S4Q9NUP1 217 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 TLL2Q9Y6L7 1015 aa14.36□□□□□ -0.11
VPS13D-205ENST00000473099 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 STRNO43815 780 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 EIF3JO75822 258 aaKnown RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 RPN1P04843 607 aaKnown RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 SLC10A3P09131 477 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 SFNP31947 248 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 JAK3P52333 1124 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 KRT76Q01546 638 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 MKRN3Q13064 507 aaKnown RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 FAM110CQ1W6H9 321 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 DPCR1Q3MIW9 517 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 C11orf57Q6ZUT1 292 aaPredicted RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 ABRAQ8N0Z2 381 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 GJA10Q969M2 543 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 EIF2AK1Q9BQI3 630 aaKnown RBP14.35□□□□□ -0.11
VPS13D-205ENST00000473099 TRIM9Q9C026 710 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 KIAA1024Q9UPX6 916 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 DNM3Q9UQ16 869 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 NFASCO94856 1347 aa14.35□□□□□ -0.11
VPS13D-205ENST00000473099 DNAJC25-GNG10A0A024R161 153 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 PVALEFA0A1B0GWK0 134 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 IKBKBO14920 756 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 CYP2C8P10632 490 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 EDNRBP24530 442 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 ICAM3P32942 547 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 PDE4DQ08499 809 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 SREBF2Q12772 1141 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 CUL4BQ13620 913 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 IQCB1Q15051 598 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 MIER3Q7Z3K6 550 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 CATSPER3Q86XQ3 398 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 FAM43AQ8N2R8 423 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 GIMAP8Q8ND71 665 aaPredicted RBP14.34□□□□□ -0.11
VPS13D-205ENST00000473099 PLIN2Q99541 437 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 MTRQ99707 1265 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 NUDT12Q9BQG2 462 aa14.34□□□□□ -0.11
VPS13D-205ENST00000473099 POTEB3A0JP26 581 aa14.33□□□□□ -0.12
VPS13D-205ENST00000473099 DHX15O43143 795 aaKnown RBP14.33□□□□□ -0.12
VPS13D-205ENST00000473099 DKC1O60832 514 aaKnown RBP eCLIP14.33□□□□□ -0.12
VPS13D-205ENST00000473099 MED24O75448 989 aa14.33□□□□□ -0.12
VPS13D-205ENST00000473099 RHOBTB3O94955 611 aa14.33□□□□□ -0.12
VPS13D-205ENST00000473099 SPATA31C1P0DKV0 1188 aa14.33□□□□□ -0.12
VPS13D-205ENST00000473099 TGFB3P10600 412 aa14.33□□□□□ -0.12
VPS13D-205ENST00000473099 ERCC5P28715 1186 aaPredicted RBP14.33□□□□□ -0.12
VPS13D-205ENST00000473099 CNTN2Q02246 1040 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms