RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 RBL2Q08999 1139 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 TOB2Q14106 344 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-221ENST00000472563 ZNF697Q5TEC3 545 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 CAGE1Q8TC20 777 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 AFAP1L1Q8TED9 768 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 TUT1Q9H6E5 874 aaKnown RBP13.7□□□□□ -0.22
SYNE1-221ENST00000472563 JADE2Q9NQC1 790 aa13.7□□□□□ -0.22
SYNE1-221ENST00000472563 TMEM265A0A087WTH1 108 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 ESYT2A0FGR8 921 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 ATP9AO75110 1047 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 IQCF3P0C7M6 154 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 KCNA2P16389 499 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 IFNAR1P17181 557 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 CLK2P49760 499 aaKnown RBP13.69□□□□□ -0.22
SYNE1-221ENST00000472563 PTK7Q13308 1070 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 AP3B2Q13367 1082 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 MTMR1Q13613 665 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 NTRK3Q16288 839 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 PKN1Q16512 942 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 CCDC12Q8WUD4 166 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-221ENST00000472563 DHX38Q92620 1227 aaKnown RBP13.69□□□□□ -0.22
SYNE1-221ENST00000472563 SEMA6BQ9H3T3 888 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 CXXC1Q9P0U4 656 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-221ENST00000472563 STXBP5LQ9Y2K9 1186 aa13.69□□□□□ -0.22
SYNE1-221ENST00000472563 BAZ2BQ9UIF8 2168 aaKnown RBP13.69□□□□□ -0.22
SYNE1-221ENST00000472563 SELPP16109 830 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 HOXC8P31273 242 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 SREBF1P36956 1147 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 AKAP17AQ02040 695 aaKnown RBP13.68□□□□□ -0.22
SYNE1-221ENST00000472563 MCTP2Q6DN12 878 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 OTOP2Q7RTS6 562 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 PHKBQ93100 1093 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 ZNF274Q96GC6 653 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-221ENST00000472563 GUCD1Q96NT3 240 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 MXRA8Q9BRK3 442 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 RNF26Q9BY78 433 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-221ENST00000472563 ANO3Q9BYT9 981 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 UPF3BQ9BZI7 483 aaKnown RBP13.68□□□□□ -0.22
SYNE1-221ENST00000472563 ZMYND12Q9H0C1 365 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 C6orf50Q9HD87 102 aa13.68□□□□□ -0.22
SYNE1-221ENST00000472563 EIF5BO60841 1220 aaKnown RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 PARNO95453 639 aaKnown RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SMIM10L2AP0DMW4 78 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SMIM10L2BP0DMW5 78 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 DNAJB2P25686 324 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 ANAPC15P60006 121 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 TRIM71Q2Q1W2 868 aaKnown RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 CEP55Q53EZ4 464 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 DEFB128Q7Z7B8 93 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SERINC5Q86VE9 423 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SEPT1Q8WYJ6 367 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 PGBD1Q96JS3 809 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SLC26A6Q9BXS9 759 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 TTYH1Q9H313 450 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 NCOA5Q9HCD5 579 aaKnown RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 KCNH7Q9NS40 1196 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 PDRG1Q9NUG6 133 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 TMEM260Q9NX78 707 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 ZNF215Q9UL58 517 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-221ENST00000472563 TELO2Q9Y4R8 837 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 SCN10AQ9Y5Y9 1956 aa13.67□□□□□ -0.22
SYNE1-221ENST00000472563 GSTTP1A0A1W2PQM5 241 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 C17orf102A2RUQ5 167 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 MEIS1O00470 390 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 CKBP12277 381 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 ACTN1P12814 892 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 GNA11P29992 359 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 CCT2P78371 535 aaKnown RBP13.66□□□□□ -0.22
SYNE1-221ENST00000472563 ARHGAP4P98171 946 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 ZNF200P98182 395 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-221ENST00000472563 SP4Q02446 784 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 HIC1Q14526 733 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 UTP14CQ5TAP6 766 aaKnown RBP13.66□□□□□ -0.22
SYNE1-221ENST00000472563 LRRC8DQ7L1W4 858 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 NIPA1Q7RTP0 329 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 CYP2W1Q8TAV3 490 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 TIFAQ96CG3 184 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 FAM161BQ96MY7 647 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 PBX4Q9BYU1 374 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 SLC4A7Q9Y6M7 1214 aa13.66□□□□□ -0.22
SYNE1-221ENST00000472563 GRXCR1A8MXD5 290 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 CXCL10P02778 98 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 CYP3A4P08684 503 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 GNAT1P11488 350 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 TCF7P36402 384 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-221ENST00000472563 GPNMBQ14956 572 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 RAB30Q15771 203 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 JAKMIP3Q5VZ66 844 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 TRIM50Q86XT4 487 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 TRIM22Q8IYM9 498 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 REXO1Q8N1G1 1221 aaKnown RBP13.65□□□□□ -0.22
SYNE1-221ENST00000472563 CCDC148Q8NFR7 591 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 BICD2Q8TD16 824 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 CRYGNQ8WXF5 182 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 ATP6V0A1Q93050 837 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 WNT8BQ93098 351 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 IL17RAQ96F46 866 aa13.65□□□□□ -0.22
SYNE1-221ENST00000472563 CDX2Q99626 313 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-221ENST00000472563 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.22
SYNE1-221ENST00000472563 RNPEPQ9H4A4 650 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms