RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 SEC63Q9UGP8 760 aaKnown RBP28.23■■■□□ 2.11
PTCH1-210ENST00000468211 COL4A4P53420 1690 aaPredicted RBP28.23■■■□□ 2.11
PTCH1-210ENST00000468211 LCHNA4D1U4 455 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 PIK3CDO00329 1044 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 STAM2O75886 525 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 LIFRP42702 1097 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 PCNX4Q63HM2 1172 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 MICAL3Q7RTP6 2002 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 SERINC5Q86VE9 423 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 MICALL1Q8N3F8 863 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 GPR20Q99678 358 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 THEGQ9P2T0 379 aa28.22■■■□□ 2.11
PTCH1-210ENST00000468211 FIBPO43427 364 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 PARNO95453 639 aaKnown RBP28.21■■■□□ 2.11
PTCH1-210ENST00000468211 SMIM10L2AP0DMW4 78 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 SMIM10L2BP0DMW5 78 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 HOXC8P31273 242 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 GNAQP50148 359 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 KRT40Q6A162 431 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 METTL7BQ6UX53 244 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 TRIM50Q86XT4 487 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 CCDC82Q8N4S0 544 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 SYMPKQ92797 1274 aaKnown RBP28.21■■■□□ 2.11
PTCH1-210ENST00000468211 CUL5Q93034 780 aa28.21■■■□□ 2.11
PTCH1-210ENST00000468211 KAT6AQ92794 2004 aa28.2■■■□□ 2.11
PTCH1-210ENST00000468211 C17orf102A2RUQ5 167 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 KIF28PB7ZC32 967 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 TLL1O43897 1013 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 NEDD9Q14511 834 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 ATXN2LQ8WWM7 1075 aaKnown RBP28.2■■■□□ 2.1
PTCH1-210ENST00000468211 ARNTL2Q8WYA1 636 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 RNPEPQ9H4A4 650 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 MTCH2Q9Y6C9 303 aa28.2■■■□□ 2.1
PTCH1-210ENST00000468211 NOP56O00567 594 aaKnown RBP28.19■■■□□ 2.1
PTCH1-210ENST00000468211 TREHO43280 583 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 BMP2KLQ5H9B9 411 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 ATP6V0A1Q93050 837 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 OSBPL7Q9BZF2 842 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 SLC12A7Q9Y666 1083 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 MUC3AQ02505 3323 aa28.19■■■□□ 2.1
PTCH1-210ENST00000468211 ABHD14A-ACY1A0A1B0GW23 586 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 CALM1P0DP23 149 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 CALM2P0DP24 149 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 CALM3P0DP25 149 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 THPOP40225 353 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 SP4Q02446 784 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 UBE2SQ16763 222 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 TMTC3Q6ZXV5 915 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 FANCBQ8NB91 859 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 ASB2Q96Q27 587 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 USP26Q9BXU7 913 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 PSTPIP2Q9H939 334 aa28.18■■■□□ 2.1
PTCH1-210ENST00000468211 TCF20Q9UGU0 1960 aaKnown RBP28.18■■■□□ 2.1
PTCH1-210ENST00000468211 XIRP2A4UGR9 3374 aa28.17■■■□□ 2.1
PTCH1-210ENST00000468211 POU3F3P20264 500 aaPredicted RBP28.17■■■□□ 2.1
PTCH1-210ENST00000468211 XRRA1Q6P2D8 792 aa28.17■■■□□ 2.1
PTCH1-210ENST00000468211 SGMS1Q86VZ5 419 aa28.17■■■□□ 2.1
PTCH1-210ENST00000468211 MICU3Q86XE3 530 aa28.17■■■□□ 2.1
PTCH1-210ENST00000468211 SETD4Q9NVD3 440 aa28.17■■■□□ 2.1
PTCH1-210ENST00000468211 RSPH10B2B2RC85 870 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 ATP9AO75110 1047 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 LGR5O75473 907 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 RSPH10BP0C881 870 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 IKBKEQ14164 716 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 UTP14CQ5TAP6 766 aaKnown RBP28.16■■■□□ 2.1
PTCH1-210ENST00000468211 LIN28BQ6ZN17 250 aaKnown RBP eCLIP28.16■■■□□ 2.1
PTCH1-210ENST00000468211 DBF4BQ8NFT6 615 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 TCEANC2Q96MN5 208 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 SENP7Q9BQF6 1050 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 ZBED2Q9BTP6 218 aa28.16■■■□□ 2.1
PTCH1-210ENST00000468211 GJB5O95377 273 aa28.15■■■□□ 2.1
PTCH1-210ENST00000468211 ITGB5P18084 799 aa28.15■■■□□ 2.1
PTCH1-210ENST00000468211 MKRN4PQ13434 485 aaPredicted RBP28.15■■■□□ 2.1
PTCH1-210ENST00000468211 FAM117BQ6P1L5 589 aa28.15■■■□□ 2.1
PTCH1-210ENST00000468211 SIP14410 1827 aa28.15■■■□□ 2.1
PTCH1-210ENST00000468211 LPXNO60711 386 aa28.14■■■□□ 2.1
PTCH1-210ENST00000468211 KCNA2P16389 499 aa28.14■■■□□ 2.1
PTCH1-210ENST00000468211 MRPS5P82675 430 aaKnown RBP28.14■■■□□ 2.1
PTCH1-210ENST00000468211 GRB10Q13322 594 aa28.14■■■□□ 2.1
PTCH1-210ENST00000468211 NLRX1Q86UT6 975 aa28.14■■■□□ 2.1
PTCH1-210ENST00000468211 RASEFQ8IZ41 740 aa28.14■■■□□ 2.1
PTCH1-210ENST00000468211 ADAM17P78536 824 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 EXOSC10Q01780 885 aaKnown RBP28.13■■■□□ 2.09
PTCH1-210ENST00000468211 ADCK5Q3MIX3 580 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 APOA5Q6Q788 366 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 CENPQQ7L2Z9 268 aaPredicted RBP28.13■■■□□ 2.09
PTCH1-210ENST00000468211 GPRASP2Q96D09 838 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 NEK1Q96PY6 1258 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 BRPF3Q9ULD4 1205 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 EMSYQ7Z589 1322 aa28.13■■■□□ 2.09
PTCH1-210ENST00000468211 CTSHP09668 335 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 TFF2Q03403 129 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 PLEKHG4Q58EX7 1191 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 HEATR3Q7Z4Q2 680 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 LMBR1Q8WVP7 490 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 RAD9AQ99638 391 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 PKD2L1Q9P0L9 805 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 PCDHA6Q9UN73 950 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 PCDHA8Q9Y5H6 950 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 UBIAD1Q9Y5Z9 338 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms