RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 RTEL1Q9NZ71 1219 aa8.79□□□□□ -1
USP4-207ENST00000462673 COL20A1Q9P218 1284 aa8.79□□□□□ -1
USP4-207ENST00000462673 FRMPD4Q14CM0 1322 aa8.79□□□□□ -1
USP4-207ENST00000462673 SPATA31C2B4DYI2 1134 aa8.78□□□□□ -1
USP4-207ENST00000462673 NOP56O00567 594 aaKnown RBP8.78□□□□□ -1
USP4-207ENST00000462673 PPFIA3O75145 1194 aa8.78□□□□□ -1
USP4-207ENST00000462673 ADCY5O95622 1261 aa8.78□□□□□ -1
USP4-207ENST00000462673 C6orf222P0C671 652 aaPredicted RBP8.78□□□□□ -1
USP4-207ENST00000462673 ADCYAP1R1P41586 468 aa8.78□□□□□ -1
USP4-207ENST00000462673 GJA9P57773 515 aa8.78□□□□□ -1
USP4-207ENST00000462673 ARHGAP4P98171 946 aa8.78□□□□□ -1
USP4-207ENST00000462673 TRIM32Q13049 653 aa8.78□□□□□ -1
USP4-207ENST00000462673 ORC2Q13416 577 aaPredicted RBP8.78□□□□□ -1
USP4-207ENST00000462673 DGKDQ16760 1214 aa8.78□□□□□ -1
USP4-207ENST00000462673 KRT40Q6A162 431 aa8.78□□□□□ -1
USP4-207ENST00000462673 PPP4R3AQ6IN85 833 aa8.78□□□□□ -1
USP4-207ENST00000462673 TYW1BQ6NUM6 668 aa8.78□□□□□ -1
USP4-207ENST00000462673 NEK8Q86SG6 692 aa8.78□□□□□ -1
USP4-207ENST00000462673 FBXO16Q8IX29 292 aaPredicted RBP8.78□□□□□ -1
USP4-207ENST00000462673 DIS3L2Q8IYB7 885 aaKnown RBP8.78□□□□□ -1
USP4-207ENST00000462673 ZNF710Q8N1W2 664 aa8.78□□□□□ -1
USP4-207ENST00000462673 OR6J1Q8NGC5 347 aa8.78□□□□□ -1
USP4-207ENST00000462673 TBCKQ8TEA7 893 aa8.78□□□□□ -1
USP4-207ENST00000462673 FGD4Q96M96 766 aa8.78□□□□□ -1
USP4-207ENST00000462673 GLT1D1Q96MS3 346 aa8.78□□□□□ -1
USP4-207ENST00000462673 INPP4AQ96PE3 977 aaPredicted RBP8.78□□□□□ -1
USP4-207ENST00000462673 PURBQ96QR8 312 aaKnown RBP8.78□□□□□ -1
USP4-207ENST00000462673 KATNAL1Q9BW62 490 aa8.78□□□□□ -1
USP4-207ENST00000462673 DDX41Q9UJV9 622 aaKnown RBP8.78□□□□□ -1
USP4-207ENST00000462673 KCNJ14Q9UNX9 436 aa8.78□□□□□ -1
USP4-207ENST00000462673 DOCK3Q8IZD9 2030 aa8.78□□□□□ -1
USP4-207ENST00000462673 BAZ2BQ9UIF8 2168 aaKnown RBP8.78□□□□□ -1
USP4-207ENST00000462673 MEIS1O00470 390 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 JAK2O60674 1132 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 ZSCAN22P10073 491 aaPredicted RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 SMPD1P17405 629 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 TAL1P17542 331 aaPredicted RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 CST5P28325 142 aaPredicted RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 CIITAP33076 1130 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 TRAPPC10P48553 1259 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 NKX3-2P78367 333 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 FSCN1Q16658 493 aaKnown RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 CELF3Q5SZQ8 465 aaKnown RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 METTL7BQ6UX53 244 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 PIK3AP1Q6ZUJ8 805 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 TLK2Q86UE8 772 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 PLA2G4DQ86XP0 818 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 SLFN12Q8IYM2 578 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 EMID1Q96A84 441 aaPredicted RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 KATNBL1Q9H079 304 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 GNEQ9Y223 722 aaKnown RBP8.77□□□□□ -1.01
USP4-207ENST00000462673 UBIAD1Q9Y5Z9 338 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 ELP1O95163 1332 aa8.77□□□□□ -1.01
USP4-207ENST00000462673 CYP3A7-CYP3A51PA0A087WV96 503 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 A6NJR5 290 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 BTBD18B2RXH4 712 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 TBX3O15119 743 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 CCNT1O60563 726 aaKnown RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 DKC1O60832 514 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP4-207ENST00000462673 FARP2O94887 1054 aaPredicted RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 ZSCAN20P17040 1043 aaPredicted RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 EN2P19622 333 aaPredicted RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 CYP3A7P24462 503 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 MRPS9P82933 396 aaKnown RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 LRRC41Q15345 812 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 KCNA10Q16322 511 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 LY6KQ17RY6 165 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 LETM2Q2VYF4 491 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 Q4G0T1 1027 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 PRR16Q569H4 304 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 RILPL1Q5EBL4 403 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 MYSM1Q5VVJ2 828 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 CCDC62Q6P9F0 684 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 NOSTRINQ8IVI9 506 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 TRPV1Q8NER1 839 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 PPTC7Q8NI37 304 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 SEPT1Q8WYJ6 367 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 ANKRD7Q92527 254 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 FAM20AQ96MK3 541 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 SPATA33Q96N06 139 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 AIFM3Q96NN9 605 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 RIT2Q99578 217 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 ZNF577Q9BSK1 485 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 UPF3AQ9H1J1 476 aaKnown RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 ZSCAN16Q9H4T2 348 aaPredicted RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 C11orf49Q9H6J7 331 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 AZI2Q9H6S1 392 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 PDGFCQ9NRA1 345 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 KCNH7Q9NS40 1196 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 TMEM260Q9NX78 707 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 ZNF215Q9UL58 517 aaPredicted RBP8.76□□□□□ -1.01
USP4-207ENST00000462673 STK24Q9Y6E0 443 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 PLXNA1Q9UIW2 1896 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 ASTN1O14525 1302 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 NFASCO94856 1347 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 MROH7Q68CQ1 1323 aa8.76□□□□□ -1.01
USP4-207ENST00000462673 SMTNL1A8MU46 457 aa8.75□□□□□ -1.01
USP4-207ENST00000462673 M0R2N6 131 aa8.75□□□□□ -1.01
USP4-207ENST00000462673 IPO5O00410 1097 aaKnown RBP8.75□□□□□ -1.01
USP4-207ENST00000462673 LAD1O00515 517 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms