RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SPZ1Q9BXG8 430 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 INSL6Q9Y581 213 aa17.74■□□□□ 0.43
SKA3-204ENST00000462482 RBM8AQ9Y5S9 174 aaKnown RBP17.74■□□□□ 0.43
SKA3-204ENST00000462482 SMARCA1P28370 1054 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 MCM5P33992 734 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 KRT40Q6A162 431 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 MB21D2Q8IYB1 491 aaPredicted RBP17.73■□□□□ 0.43
SKA3-204ENST00000462482 IGDCC4Q8TDY8 1250 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 GDPD5Q8WTR4 605 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 GPKOWQ92917 476 aaPredicted RBP eCLIP17.73■□□□□ 0.43
SKA3-204ENST00000462482 WNT8BQ93098 351 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 EYSQ5T1H1 3165 aa17.73■□□□□ 0.43
SKA3-204ENST00000462482 CHD9Q3L8U1 2897 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 PRC1O43663 620 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 CALM1P0DP23 149 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 CALM2P0DP24 149 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 CALM3P0DP25 149 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 KCNQ1P51787 676 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 ERVK-21P61565 698 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 MRPS9P82933 396 aaKnown RBP17.72■□□□□ 0.43
SKA3-204ENST00000462482 SP4Q02446 784 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 UTP14CQ5TAP6 766 aaKnown RBP17.72■□□□□ 0.43
SKA3-204ENST00000462482 PCNX4Q63HM2 1172 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 TRAF7Q6Q0C0 670 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 CDHR1Q96JP9 859 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 RNPEPQ9H4A4 650 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 TAF6LQ9Y6J9 622 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 FRMPD4Q14CM0 1322 aa17.72■□□□□ 0.43
SKA3-204ENST00000462482 LINC01553A4QN01 128 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 TREHO43280 583 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 CTSHP09668 335 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 COL9A1P20849 921 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 ANTXR2P58335 489 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 MBTPS1Q14703 1052 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 USP17L6PQ6QN14 398 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 FBXO22Q8NEZ5 403 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 TMEM87BQ96K49 555 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 GPR20Q99678 358 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 SENP7Q9BQF6 1050 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 MYL10Q9BUA6 226 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 C1QTNF1Q9BXJ1 281 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 LY9Q9HBG7 655 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 SETD4Q9NVD3 440 aa17.71■□□□□ 0.43
SKA3-204ENST00000462482 PRUNE2Q8WUY3 3088 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 TANC1Q9C0D5 1861 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 PIK3CDO00329 1044 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 LPXNO60711 386 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 ARHGAP4P98171 946 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 HIC1Q14526 733 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 PTPROQ16827 1216 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 TCTN1Q2MV58 587 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 PLEKHG4Q58EX7 1191 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.7■□□□□ 0.42
SKA3-204ENST00000462482 APBB2Q92870 758 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 SAMD11Q96NU1 681 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 NECAB3Q96P71 396 aaPredicted RBP17.7■□□□□ 0.42
SKA3-204ENST00000462482 YME1L1Q96TA2 773 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 PSTPIP2Q9H939 334 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 EHMT1Q9H9B1 1298 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 SUGCTQ9HAC7 445 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 VCANP13611 3396 aa17.7■□□□□ 0.42
SKA3-204ENST00000462482 HOXC8P31273 242 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 SYNE3Q6ZMZ3 975 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 SPRED2Q7Z698 418 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 RSPH3Q86UC2 560 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 GPRASP2Q96D09 838 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 BCAS3Q9H6U6 928 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 SLC12A7Q9Y666 1083 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 NRCAMQ92823 1304 aa17.69■□□□□ 0.42
SKA3-204ENST00000462482 SPDYE3A6NKU9 549 aa17.68■□□□□ 0.42
SKA3-204ENST00000462482 UPP2O95045 317 aa17.68■□□□□ 0.42
SKA3-204ENST00000462482 IRX6P78412 446 aaPredicted RBP17.68■□□□□ 0.42
SKA3-204ENST00000462482 SCN5AQ14524 2016 aa17.68■□□□□ 0.42
SKA3-204ENST00000462482 TRIM50Q86XT4 487 aa17.68■□□□□ 0.42
SKA3-204ENST00000462482 SPTBN5Q9NRC6 3674 aaKnown RBP17.68■□□□□ 0.42
SKA3-204ENST00000462482 SH2B2O14492 632 aaPredicted RBP17.67■□□□□ 0.42
SKA3-204ENST00000462482 MEIS2O14770 477 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 PLEKHA8P1O95397 391 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 LIFRP42702 1097 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 HTRA4P83105 476 aaPredicted RBP17.67■□□□□ 0.42
SKA3-204ENST00000462482 SEMA3FQ13275 785 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 TAF2Q6P1X5 1199 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 SEPT1Q8WYJ6 367 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 C17orf80Q9BSJ5 609 aa17.67■□□□□ 0.42
SKA3-204ENST00000462482 IFIH1Q9BYX4 1025 aaKnown RBP17.67■□□□□ 0.42
SKA3-204ENST00000462482 TCF7P36402 384 aaPredicted RBP17.66■□□□□ 0.42
SKA3-204ENST00000462482 PPFIA1Q13136 1202 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 RNF20Q5VTR2 975 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 SRBD1Q8N5C6 995 aaKnown RBP17.66■□□□□ 0.42
SKA3-204ENST00000462482 LMBR1Q8WVP7 490 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 GLG1Q92896 1179 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 TNPO1Q92973 898 aaKnown RBP17.66■□□□□ 0.42
SKA3-204ENST00000462482 TOP1MTQ969P6 601 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 ANO2Q9NQ90 1003 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 ERAP1Q9NZ08 941 aa17.66■□□□□ 0.42
SKA3-204ENST00000462482 GBF1Q92538 1859 aa17.65■□□□□ 0.42
SKA3-204ENST00000462482 SLC27A2O14975 620 aa17.65■□□□□ 0.42
SKA3-204ENST00000462482 MAFGO15525 162 aa17.65■□□□□ 0.42
SKA3-204ENST00000462482 RPLP2P05387 115 aaKnown RBP17.65■□□□□ 0.42
SKA3-204ENST00000462482 RXRAP19793 462 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms