RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 GNEQ9Y223 722 aaKnown RBP13.11□□□□□ -0.31
SCN9A-204ENST00000452182 Q9Y3F1 56 aa13.11□□□□□ -0.31
SCN9A-204ENST00000452182 MSCO60682 206 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ATP9AO75110 1047 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 SMPD1P17405 629 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 UBA1P22314 1058 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ATP2C1P98194 919 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 SP2Q02086 613 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 TNFAIP2Q03169 654 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 SF3A1Q15459 793 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 CALCRLQ16602 461 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ANO1Q5XXA6 986 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 HAS1Q92839 578 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 EMID1Q96A84 441 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 USP28Q96RU2 1077 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 CFAP45Q9UL16 551 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 STK24Q9Y6E0 443 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 DHX15O43143 795 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ADCY6O43306 1168 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 DUSP11O75319 330 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 BAG4O95429 457 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 CCND3P30281 292 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 PRPHP41219 470 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 NASPP49321 788 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 PTGDRQ13258 359 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ITGB3BPQ13352 177 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 PTPAQ15257 358 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 LY6KQ17RY6 165 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 CELF3Q5SZQ8 465 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ARL6IP4Q66PJ3 421 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 ZNF333Q96JL9 665 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 TMEM60Q9H2L4 133 aa13.1□□□□□ -0.31
SCN9A-204ENST00000452182 PAK6Q9NQU5 681 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 DDX20Q9UHI6 824 aaKnown RBP13.1□□□□□ -0.31
SCN9A-204ENST00000452182 GTPBP6O43824 516 aaPredicted RBP13.09□□□□□ -0.31
SCN9A-204ENST00000452182 PSMD10O75832 226 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 YEATS4O95619 227 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 GH1P01241 217 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 OR52Z1P0C646 297 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 CNGA1P29973 690 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 NKX3-2P78367 333 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 DNM1Q05193 864 aaKnown RBP13.09□□□□□ -0.31
SCN9A-204ENST00000452182 LAMC2Q13753 1193 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 SLC39A14Q15043 492 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 METTL7BQ6UX53 244 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 SDF4Q9BRK5 362 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 MCOLN1Q9GZU1 580 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.09□□□□□ -0.31
SCN9A-204ENST00000452182 CLIC4Q9Y696 253 aa13.09□□□□□ -0.31
SCN9A-204ENST00000452182 FRMPD3Q5JV73 1810 aa13.08□□□□□ -0.31
SCN9A-204ENST00000452182 DOCK5Q9H7D0 1870 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 TCHHQ07283 1943 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 FARP2O94887 1054 aaPredicted RBP13.08□□□□□ -0.32
SCN9A-204ENST00000452182 GGPS1O95749 300 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 RARBP10826 455 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 KRT85P78386 507 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 ARHGAP1Q07960 439 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 TMEM63BQ5T3F8 832 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 LRCH2Q5VUJ6 765 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 B3GNT9Q6UX72 402 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 DHX37Q8IY37 1157 aaKnown RBP13.08□□□□□ -0.32
SCN9A-204ENST00000452182 LINC00301Q8NCQ3 95 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 FTOQ9C0B1 505 aaKnown RBP eCLIP13.08□□□□□ -0.32
SCN9A-204ENST00000452182 UNC93B1Q9H1C4 597 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 JPH1Q9HDC5 661 aaPredicted RBP13.08□□□□□ -0.32
SCN9A-204ENST00000452182 RYDENQ9NUL5 291 aaKnown RBP13.08□□□□□ -0.32
SCN9A-204ENST00000452182 PCDHA12Q9UN75 941 aa13.08□□□□□ -0.32
SCN9A-204ENST00000452182 MARCH6O60337 910 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 GAS7O60861 476 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 CCL5P13501 91 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 GJA9P57773 515 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 KRT76Q01546 638 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 PPP2R5CQ13362 524 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 LHX8Q68G74 356 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 ZNF746Q6NUN9 644 aaPredicted RBP13.07□□□□□ -0.32
SCN9A-204ENST00000452182 CHRDL2Q6WN34 429 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 CYFIP1Q7L576 1253 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 TLK2Q86UE8 772 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 TEKT3Q9BXF9 490 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 SCAND2PQ9GZW5 306 aaPredicted RBP13.07□□□□□ -0.32
SCN9A-204ENST00000452182 UPF3AQ9H1J1 476 aaKnown RBP13.07□□□□□ -0.32
SCN9A-204ENST00000452182 TTC12Q9H892 705 aaPredicted RBP13.07□□□□□ -0.32
SCN9A-204ENST00000452182 MLXIPQ9HAP2 919 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 TFIP11Q9UBB9 837 aaKnown RBP13.07□□□□□ -0.32
SCN9A-204ENST00000452182 SLC9A2Q9UBY0 812 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 VAV3Q9UKW4 847 aa13.07□□□□□ -0.32
SCN9A-204ENST00000452182 PPP6R2O75170 966 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 TXKP42681 527 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 SPIRE1Q08AE8 756 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 PDIA5Q14554 519 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 MTFR1Q15390 333 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 FOXD4L6Q3SYB3 417 aaPredicted RBP13.06□□□□□ -0.32
SCN9A-204ENST00000452182 GJC2Q5T442 439 aaPredicted RBP13.06□□□□□ -0.32
SCN9A-204ENST00000452182 FOXD4L3Q6VB84 417 aaPredicted RBP13.06□□□□□ -0.32
SCN9A-204ENST00000452182 DTHD1Q6ZMT9 781 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 SMAP1Q8IYB5 467 aaPredicted RBP13.06□□□□□ -0.32
SCN9A-204ENST00000452182 PPTC7Q8NI37 304 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 COPS5Q92905 334 aa13.06□□□□□ -0.32
SCN9A-204ENST00000452182 TNPO1Q92973 898 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms