RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PRPHP41219 470 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 TXKP42681 527 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 ITGB3BPQ13352 177 aaPredicted RBP17.83■□□□□ 0.44
USP40-206ENST00000443711 PTPAQ15257 358 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 CELF3Q5SZQ8 465 aaKnown RBP17.83■□□□□ 0.44
USP40-206ENST00000443711 LRCH2Q5VUJ6 765 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 ARL6IP4Q66PJ3 421 aaKnown RBP17.83■□□□□ 0.44
USP40-206ENST00000443711 LINC00301Q8NCQ3 95 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 TEKT3Q9BXF9 490 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 MLXIPQ9HAP2 919 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 TCEAL9Q9UHQ7 104 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 PCDHA12Q9UN75 941 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 Q9Y3F1 56 aa17.83■□□□□ 0.44
USP40-206ENST00000443711 DHX15O43143 795 aaKnown RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 MSCO60682 206 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 DUSP11O75319 330 aaKnown RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 PSMD10O75832 226 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 LAMC2Q13753 1193 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 TMEM266Q2M3C6 531 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 TMEM63BQ5T3F8 832 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 CYFIP1Q7L576 1253 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 COPS5Q92905 334 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 GJA10Q969M2 543 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 SCAND2PQ9GZW5 306 aaPredicted RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 AP5M1Q9H0R1 490 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 TTC12Q9H892 705 aaPredicted RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 RCOR1Q9UKL0 485 aa17.82■□□□□ 0.44
USP40-206ENST00000443711 GNEQ9Y223 722 aaKnown RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 MORC2Q9Y6X9 1032 aaPredicted RBP17.82■□□□□ 0.44
USP40-206ENST00000443711 SPTLC2O15270 562 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 DYNC1LI2O43237 492 aaPredicted RBP17.81■□□□□ 0.44
USP40-206ENST00000443711 RARBP10826 455 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 KRT76Q01546 638 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 METTL7BQ6UX53 244 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 DTHD1Q6ZMT9 781 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 OR6J1Q8NGC5 347 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 ARMC5Q96C12 935 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 CHAMP1Q96JM3 812 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 SPATA32Q96LK8 384 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 MCOLN1Q9GZU1 580 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.81■□□□□ 0.44
USP40-206ENST00000443711 UNC93B1Q9H1C4 597 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 BCAS3Q9H6U6 928 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 JPH1Q9HDC5 661 aaPredicted RBP17.81■□□□□ 0.44
USP40-206ENST00000443711 SLC9A2Q9UBY0 812 aa17.81■□□□□ 0.44
USP40-206ENST00000443711 DDX20Q9UHI6 824 aaKnown RBP17.81■□□□□ 0.44
USP40-206ENST00000443711 DDX39AO00148 427 aaKnown RBP17.8■□□□□ 0.44
USP40-206ENST00000443711 ADCY6O43306 1168 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 SORBS3O60504 671 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 FARP2O94887 1054 aaPredicted RBP17.8■□□□□ 0.44
USP40-206ENST00000443711 CCL5P13501 91 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 ARHGAP1Q07960 439 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 GJC2Q5T442 439 aaPredicted RBP17.8■□□□□ 0.44
USP40-206ENST00000443711 KCNG4Q8TDN1 519 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 EMID1Q96A84 441 aaPredicted RBP17.8■□□□□ 0.44
USP40-206ENST00000443711 FERMT2Q96AC1 680 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 ZNF333Q96JL9 665 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 RAB34Q9BZG1 259 aa17.8■□□□□ 0.44
USP40-206ENST00000443711 PPP6R2O75170 966 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 MARCKSP29966 332 aaPredicted RBP17.79■□□□□ 0.44
USP40-206ENST00000443711 TECP42680 631 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 FXR2P51116 673 aaKnown RBP eCLIP17.79■□□□□ 0.44
USP40-206ENST00000443711 PDIA5Q14554 519 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 ZNF746Q6NUN9 644 aaPredicted RBP17.79■□□□□ 0.44
USP40-206ENST00000443711 TLK2Q86UE8 772 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 SPATA33Q96N06 139 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 RNF208Q9H0X6 261 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 SPC25Q9HBM1 224 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 VAV3Q9UKW4 847 aa17.79■□□□□ 0.44
USP40-206ENST00000443711 SRPRBQ9Y5M8 271 aaKnown RBP17.79■□□□□ 0.44
USP40-206ENST00000443711 VWA3AA6NCI4 1184 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 NOP56O00567 594 aaKnown RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 GJA9P57773 515 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 SP4Q02446 784 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 PPP2R5CQ13362 524 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 MTFR1Q15390 333 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 BRDTQ58F21 947 aaPredicted RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 B3GNT9Q6UX72 402 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 KRI1Q8N9T8 703 aaKnown RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 LEO1Q8WVC0 666 aaPredicted RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 SEPT1Q8WYJ6 367 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 LENG1Q96BZ8 264 aaPredicted RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 UPF3AQ9H1J1 476 aaKnown RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 UNC45AQ9H3U1 944 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 XPNPEP3Q9NQH7 507 aa17.78■□□□□ 0.44
USP40-206ENST00000443711 PAK6Q9NQU5 681 aaPredicted RBP17.78■□□□□ 0.44
USP40-206ENST00000443711 ELP1O95163 1332 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 WDR64B1ANS9 1081 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 CCNE2O96020 404 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 MYCP01106 439 aaPredicted RBP17.77■□□□□ 0.44
USP40-206ENST00000443711 PTGS1P23219 599 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 SFNP31947 248 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 LONP1P36776 959 aaKnown RBP17.77■□□□□ 0.44
USP40-206ENST00000443711 JAK3P52333 1124 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 ACTR2P61160 394 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 SPIRE1Q08AE8 756 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 IL17AQ16552 155 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 CSPP1Q1MSJ5 1256 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 HSDL1Q3SXM5 330 aa17.77■□□□□ 0.44
USP40-206ENST00000443711 LHX8Q68G74 356 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms