RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 MAP7D3Q8IWC1 876 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CFAP61Q8NHU2 1237 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 INTS4Q96HW7 963 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 NSMCE3Q96MG7 304 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 KRTAP3-2Q9BYR7 98 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 EPN3Q9H201 632 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CCSER2Q9H7U1 834 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 FANCFQ9NPI8 374 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 MTRF1LQ9UGC7 380 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 SEC63Q9UGP8 760 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 BAIAP2L1Q9UHR4 511 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 RASAL2Q9UJF2 1139 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 RIMKLBQ9ULI2 386 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CHMP2BQ9UQN3 213 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 RABGAP1Q9Y3P9 1069 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PCDHB4Q9Y5E5 795 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 NKTRP30414 1462 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 ABCC8Q09428 1581 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 TOP2AP11388 1531 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 CAMSAP2Q08AD1 1489 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 WDR33Q9C0J8 1336 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 A0A1B0GVL5 298 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 GNAT3A8MTJ3 354 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PLSCR1O15162 318 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 TSPAN9O75954 239 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CSPG5O95196 566 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ASLP04424 464 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CTRB1P17538 263 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SP100P23497 879 aaPredicted RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 BPIFB3P59826 476 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 DNM1Q05193 864 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 PKP1Q13835 747 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 UBE4AQ14139 1066 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 KIF22Q14807 665 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PPP1R7Q15435 360 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ANO4Q32M45 955 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 TNNI3KQ59H18 835 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 WDR44Q5JSH3 913 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SNX30Q5VWJ9 437 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 E4F1Q66K89 784 aaPredicted RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 INTS3Q68E01 1043 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 CTRB2Q6GPI1 263 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 CAPN12Q6ZSI9 719 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 Q6ZUG5 572 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SLC51BQ86UW2 128 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 LSMEM1Q8N8F7 131 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 RSAD2Q8WXG1 361 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 VPS50Q96JG6 964 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 TTC1Q99614 292 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 HAUS8Q9BT25 410 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PLVAPQ9BX97 442 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 GLT8D2Q9H1C3 349 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 EHMT1Q9H9B1 1298 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 MRGBPQ9NV56 204 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 HAUS2Q9NVX0 235 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 LARSQ9P2J5 1176 aaKnown RBP7.08□□□□□ -1.28
MCF2-205ENST00000437564 LIMD1Q9UGP4 676 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 SCOCQ9UIL1 159 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ATP11BQ9Y2G3 1177 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ZBTB1Q9Y2K1 713 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 ATP6V1DQ9Y5K8 247 aa7.08□□□□□ -1.28
MCF2-205ENST00000437564 PLXNC1O60486 1568 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SAMD9Q5K651 1589 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC18Q5T9S5 1454 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 ZNF536O15090 1300 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 TLDC2A0PJX2 215 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC169A6NNP5 214 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 G3V3G9 751 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 HNRNPRO43390 633 aaKnown RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 SULT1B1O43704 296 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 PHACTR2O75167 634 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SERPINB7O75635 380 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 BAIAP3O94812 1187 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 OXSR1O95747 527 aaPredicted RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 RXRAP19793 462 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 M6PRP20645 277 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 GBP1P32455 592 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 HAAOP46952 286 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 TMED10P49755 219 aaKnown RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 ADARP55265 1226 aaKnown RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 CETN1Q12798 172 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 ZNF268Q14587 947 aaPredicted RBP7.07□□□□□ -1.28
MCF2-205ENST00000437564 NR1D2Q14995 579 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SKIDA1Q1XH10 827 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 KRT71Q3SY84 523 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD20A8PQ5CZ79 823 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SLC27A3Q5K4L6 730 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 PDXDC2PQ6P474 469 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CYP26C1Q6V0L0 522 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC81Q6ZN84 652 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC83Q8IWF9 413 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SIX5Q8N196 739 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 BBOF1Q8ND07 529 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC148Q8NFR7 591 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 SH3KBP1Q96B97 665 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 TIPINQ9BVW5 301 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 CCDC113Q9H0I3 377 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 VPS16Q9H269 839 aa7.07□□□□□ -1.28
MCF2-205ENST00000437564 TRPC7Q9HCX4 862 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms