RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 TXLNAP40222 546 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 RPS6P62753 249 aaKnown RBP12.72□□□□□ -0.37
LINC00539-203ENST00000434601 GRB14Q14449 540 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 Q4G0T1 1027 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 AK8Q96MA6 479 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 KCNMB3Q9NPA1 279 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 SLC5A4Q9NY91 659 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 FBXO40Q9UH90 709 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 DDX20Q9UHI6 824 aaKnown RBP12.72□□□□□ -0.37
LINC00539-203ENST00000434601 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 ZNF236Q9UL36 1845 aa12.72□□□□□ -0.37
LINC00539-203ENST00000434601 FAM86B1E9PN63 330 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 FAM86B2P0C5J1 330 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 CNGA1P29973 690 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 ZNF76P36508 570 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 FXR2P51116 673 aaKnown RBP eCLIP12.71□□□□□ -0.37
LINC00539-203ENST00000434601 BAATQ14032 418 aaPredicted RBP12.71□□□□□ -0.37
LINC00539-203ENST00000434601 CAMK4Q16566 473 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 TMEM266Q2M3C6 531 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 PRR16Q569H4 304 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.37
LINC00539-203ENST00000434601 USP49Q70CQ1 688 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 DPP9Q86TI2 863 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 LENG9Q96B70 501 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 EPSTI1Q96J88 318 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 TIGD1Q96MW7 591 aa12.71□□□□□ -0.37
LINC00539-203ENST00000434601 A1CFQ9NQ94 594 aaKnown RBP12.71□□□□□ -0.37
LINC00539-203ENST00000434601 CUL9Q8IWT3 2517 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 IGLV3-22A0A075B6J6 115 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 TBX3O15119 743 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 MARCH6O60337 910 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 SLC25A27O95847 323 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 TXKP42681 527 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 SETQ01105 290 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 GSE1Q14687 1217 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 LRRC26Q2I0M4 334 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 OLFML2BQ68BL8 750 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 SLFN12Q8IYM2 578 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 DEFB123Q8N688 67 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 IGSF22Q8N9C0 903 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 ARRDC4Q8NCT1 418 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 SHCBP1Q8NEM2 672 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 ETNPPLQ8TBG4 499 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 HAS1Q92839 578 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 TAAR1Q96RJ0 339 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 LBHD1Q9BQE6 289 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 PYM1Q9BRP8 204 aaKnown RBP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 MOV10L1Q9BXT6 1211 aaKnown RBP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 RAB34Q9BZG1 259 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 SENP6Q9GZR1 1112 aaPredicted RBP12.7□□□□□ -0.38
LINC00539-203ENST00000434601 PXMP2Q9NR77 195 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 CYP39A1Q9NYL5 469 aa12.7□□□□□ -0.38
LINC00539-203ENST00000434601 LRRC37A2A6NM11 1700 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 DNM1LO00429 736 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 POLR2DO15514 142 aaKnown RBP12.69□□□□□ -0.38
LINC00539-203ENST00000434601 EIF2AK2P19525 551 aaKnown RBP12.69□□□□□ -0.38
LINC00539-203ENST00000434601 TECP42680 631 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 CEP55Q53EZ4 464 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 ARHGEF16Q5VV41 709 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 PCNX4Q63HM2 1172 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 LRSAM1Q6UWE0 723 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 KRBA2Q6ZNG9 492 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 NCAPG2Q86XI2 1143 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 IL31RAQ8NI17 732 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 RMDN3Q96TC7 470 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 SDF4Q9BRK5 362 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 CCSER1Q9C0I3 900 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 MROH8Q9H579 483 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 TTC12Q9H892 705 aaPredicted RBP12.69□□□□□ -0.38
LINC00539-203ENST00000434601 FLRT1Q9NZU1 646 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 PRKAG2Q9UGJ0 569 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 USP25Q9UHP3 1055 aa12.69□□□□□ -0.38
LINC00539-203ENST00000434601 A0A087X0B3 334 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PP2D1A8MPX8 630 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 DLL1O00548 723 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 ACTN4O43707 911 aaKnown RBP12.68□□□□□ -0.38
LINC00539-203ENST00000434601 ERCC3P19447 782 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 ADORA2AP29274 412 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 UBA7P41226 1012 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PGM5Q15124 567 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 XRRA1Q6P2D8 792 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 NIPA1Q7RTP0 329 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 CABP7Q86V35 215 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PLA2G4DQ86XP0 818 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 CKAP2LQ8IYA6 745 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 ABRAQ8N0Z2 381 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 ANKRD35Q8N283 1001 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PDILTQ8N807 584 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 CNNM3Q8NE01 707 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 NPLOC4Q8TAT6 608 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 DHX58Q96C10 678 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 FAM20AQ96MK3 541 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 MXRA8Q9BRK3 442 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PDCD2LQ9BRP1 358 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 DISC1Q9NRI5 854 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 CCDC39Q9UFE4 941 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PCDHA12Q9UN75 941 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 STXBP5LQ9Y2K9 1186 aa12.68□□□□□ -0.38
LINC00539-203ENST00000434601 PLXNA1Q9UIW2 1896 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms