RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 MAP3K7O43318 606 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 CYP19A1P11511 503 aaPredicted RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 LIG4P49917 911 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 SYNE4Q8N205 404 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 CYTH2Q99418 400 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 STAP2Q9UGK3 403 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 ARHGEF40Q8TER5 1519 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 LMTK2Q8IWU2 1503 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 H0Y3Z8 333 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 GPC4O75487 556 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 CIAO1O76071 339 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 KRT3P12035 628 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 TMOD1P28289 359 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 CASP2P42575 452 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 MYL7Q01449 175 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 ANKRD35Q8N283 1001 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 MCUQ8NE86 351 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 GPHNQ9NQX3 736 aaPredicted RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 G3BP2Q9UN86 482 aaKnown RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 RIMS1Q86UR5 1692 aaKnown RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 MYO1FO00160 1098 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 KMT5BQ4FZB7 885 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 TXLNGQ9NUQ3 528 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 ANAPC5Q9UJX4 755 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 LMNB1P20700 586 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 HDLBPQ00341 1268 aaKnown RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ACTN3Q08043 901 aaPredicted RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ALS2CLQ60I27 953 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 APOA5Q6Q788 366 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 PCDHA13Q9Y5I0 950 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 SYNJ2BP-COX16A0A087WUM0 186 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 KDM4FA0A1W2PPD8 638 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 PPFIA2O75334 1257 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ECEL1O95672 775 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 SKIP12755 728 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 XKR9Q5GH70 373 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 CC2D1AQ6P1N0 951 aaPredicted RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 PI16Q6UXB8 463 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 NME8Q8N427 588 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 TTLL11Q8NHH1 800 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 HDAC11Q96DB2 347 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 COX16Q9P0S2 106 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 RASGRF2O14827 1237 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 SDCCAG3Q96C92 435 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ZNF653Q96CK0 615 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 COL4A3BPQ9Y5P4 624 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 PTCH1Q13635 1447 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 AGLP35573 1532 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 TESPA1A2RU30 521 aaPredicted RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 N4BP1O75113 896 aaKnown RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ECE1P42892 770 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 R3HDM1Q15032 1099 aaKnown RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 ZNF658Q5TYW1 1059 aaPredicted RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 RTKN2Q8IZC4 609 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 CNOT10Q9H9A5 744 aaKnown RBP15.7■□□□□ 0.1
PTPRU-204ENST00000428026 THEGQ9P2T0 379 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 NUGGCQ68CJ6 796 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 CSRNP1Q96S65 589 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 MMS19Q96T76 1030 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 SPZ1Q9BXG8 430 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 YIPF3Q9GZM5 350 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 PLAAQ9Y263 795 aa15.7■□□□□ 0.1
PTPRU-204ENST00000428026 USP27XA6NNY8 438 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 M0R2C6 588 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 ENOX1Q8TC92 643 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 NEK9Q8TD19 979 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 PRPF31Q8WWY3 499 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 LARP4BQ92615 738 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 TSC22D3Q99576 134 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 RIOK1Q9BRS2 568 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 NACA2Q9H009 215 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 BZW2Q9Y6E2 419 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 SPATA31A1Q5TZJ5 1347 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 GFPT2O94808 682 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 RESTQ13127 1097 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 PABPC4Q13310 644 aaKnown RBP eCLIP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 BRDTQ58F21 947 aaPredicted RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 LCA5Q86VQ0 697 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 RFX6Q8HWS3 928 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 DHTKD1Q96HY7 919 aaPredicted RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 IWS1Q96ST2 819 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 MAGED2Q9UNF1 606 aaPredicted RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 ARMC9Q7Z3E5 817 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 NLRX1Q86UT6 975 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 FOXP1Q9H334 677 aaPredicted RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 FIS1Q9Y3D6 152 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 CLIC2O15247 247 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 GGCXP38435 758 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 DYNLT1P63172 113 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 RNASELQ05823 741 aaKnown RBP15.69■□□□□ 0.1
PTPRU-204ENST00000428026 MAN2A1Q16706 1144 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 CIAPIN1Q6FI81 312 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 POMGNT1Q8WZA1 660 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 PGBD1Q96JS3 809 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 AIFM3Q96NN9 605 aa15.69■□□□□ 0.1
PTPRU-204ENST00000428026 ADAMTS13Q76LX8 1427 aa15.68■□□□□ 0.1
PTPRU-204ENST00000428026 TTC4O95801 387 aa15.68■□□□□ 0.1
PTPRU-204ENST00000428026 MSH2P43246 934 aa15.68■□□□□ 0.1
PTPRU-204ENST00000428026 YWHAEP62258 255 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms