RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CEP57Q86XR8 500 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 MGARPQ8TDB4 240 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 U2AF1L4Q8WU68 220 aaKnown RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 MRRFQ96E11 262 aaKnown RBP9.53□□□□□ -0.88
USP40-203ENST00000427112 TRIM51Q9BSJ1 452 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 THAP9Q9H5L6 903 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 SH2D4AQ9H788 454 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 ACP6Q9NPH0 428 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 ATP8A2Q9NTI2 1148 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 RGL1Q9NZL6 768 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 JRKLQ9Y4A0 524 aa9.53□□□□□ -0.88
USP40-203ENST00000427112 BICDL2A1A5D9 508 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 RAD51CO43502 376 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 GFPT2O94808 682 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ERLIN2O94905 339 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 BAG3O95817 575 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 IFNAR2P48551 515 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 CCDC38Q502W7 563 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 SFMBT2Q5VUG0 894 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 CNNM4Q6P4Q7 775 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ZFPM1Q8IX07 1006 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 SPIRE2Q8WWL2 714 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 RPGRQ92834 1020 aaKnown RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 NOX5Q96PH1 765 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 STIM2Q9P246 746 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 DDX25Q9UHL0 483 aaKnown RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 PCDHA12Q9UN75 941 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 TLR2O60603 784 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 CYP2J2P51589 502 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 HDLBPQ00341 1268 aaKnown RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 KCNMA1Q12791 1236 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 TRIM14Q14142 442 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 E2F5Q15329 346 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 TMEM266Q2M3C6 531 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 FAM26FQ5R3K3 315 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 KIAA0825Q8IV33 1275 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 RETREG2Q8NC44 543 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 TAF4BQ92750 862 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ARHGEF1Q92888 912 aaKnown RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 CCNL1Q9UK58 526 aaPredicted RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 FLT1P17948 1338 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ITIH6Q6UXX5 1313 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 SPEF2Q9C093 1822 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 MYH7P12883 1935 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 CHD4Q14839 1912 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 CLGNO14967 610 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 PPFIA4O75335 1185 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 VPS41P49754 854 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ADCY7P51828 1080 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 GPSM2P81274 684 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 COASYQ13057 564 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 GRM4Q14833 912 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 MYOCDQ8IZQ8 938 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 TRIM58Q8NG06 486 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 HNRNPLLQ8WVV9 542 aaKnown RBP9.52□□□□□ -0.89
USP40-203ENST00000427112 CASKIN2Q8WXE0 1202 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 FAM118BQ9BPY3 351 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ANAPC4Q9UJX5 808 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 FAM184BQ9ULE4 1060 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 PLAAQ9Y263 795 aa9.52□□□□□ -0.89
USP40-203ENST00000427112 ATRNO75882 1429 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 NR2F2P24468 414 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 INPP5BP32019 993 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 ZC2HC1CQ53FD0 456 aaPredicted RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 UBAP2Q5T6F2 1119 aaKnown RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 KLHDC7AQ5VTJ3 777 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 MSL1Q68DK7 614 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 TSG101Q99816 390 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 CD248Q9HCU0 757 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 DAPK3O43293 454 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 TRIM49P0CI25 452 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 TRIM49CP0CI26 452 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 AMPD3Q01432 767 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 NFIAQ12857 509 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 MTM1Q13496 603 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 C2CD6Q53TS8 623 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 MUM1L1Q5H9M0 696 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 PAPD7Q5XG87 772 aaKnown RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 FAM196AQ6ZSG2 479 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 TAB3Q8N5C8 712 aaPredicted RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 OTUD6BQ8N6M0 293 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 SCLT1Q96NL6 688 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 SELENOSQ9BQE4 189 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 JPH2Q9BR39 696 aaPredicted RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 PCIF1Q9H4Z3 704 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 OSGEPQ9NPF4 335 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 TMOD4Q9NZQ9 345 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 PTPN22Q9Y2R2 807 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 NR2E1Q9Y466 385 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 ATMINO43313 823 aaPredicted RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 KIAA0754O94854 1291 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 MYBP10242 640 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 KRT13P13646 458 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 GJC1P36383 396 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 ZNF76P36508 570 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 CTTNQ14247 550 aaKnown RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 COG2Q14746 738 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 CPNE8Q86YQ8 564 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 FAM212AQ96EL1 285 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 DHTKD1Q96HY7 919 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms