RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TBC1D31Q96DN5 1066 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 STAMBPL1Q96FJ0 436 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 CHMP6Q96FZ7 201 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 RSRC1Q96IZ7 334 aaKnown RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 AK8Q96MA6 479 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 LRRC4CQ9HCJ2 640 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 CCDC194A0A1B0GVG4 234 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 NOL4O94818 638 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 RIPK1Q13546 671 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 PPP1R7Q15435 360 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 SLC18A3Q16572 532 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 INF2Q27J81 1249 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 UBLCP1Q8WVY7 318 aaPredicted RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 TLCD1Q96CP7 247 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 PACSIN1Q9BY11 444 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 LUC7LQ9NQ29 371 aaKnown RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 SWAP70Q9UH65 585 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 BAIAP2L1Q9UHR4 511 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 PCDHA6Q9UN73 950 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 PCDHA8Q9Y5H6 950 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 MYH7BA7E2Y1 1941 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 NHSL1Q5SYE7 1610 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 CICQ96RK0 1608 aaPredicted RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 GSTA1P08263 222 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 CCNHP51946 323 aaPredicted RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 NKX1-1Q15270 411 aaPredicted RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 TMC3Q7Z5M5 1100 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 ACTRT1Q8TDG2 376 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 NSMCE1Q8WV22 266 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 ANKS1AQ92625 1134 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 CENPTQ96BT3 561 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 ZNF317Q96PQ6 595 aaPredicted RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 XPO6Q96QU8 1125 aaKnown RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 PSMD1Q99460 953 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 BRIP1Q9BX63 1249 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 FAM129AQ9BZQ8 928 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 NUCKS1Q9H1E3 243 aaKnown RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 NLRC4Q9NPP4 1024 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 CEP72Q9P209 647 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 TRMT112Q9UI30 125 aaKnown RBP11.74□□□□□ -0.53
USP54-204ENST00000422491 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP54-204ENST00000422491 ATP6V0A2Q9Y487 856 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 ANKRD36CQ5JPF3 1778 aa11.74□□□□□ -0.53
USP54-204ENST00000422491 A0A087X0T9 212 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 KCNK3O14649 394 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 SART1O43290 800 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 BUB1BO60566 1050 aaPredicted RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 FAM228BP0C875 321 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 ZBTB48P10074 688 aaPredicted RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 ZKSCAN8Q15776 578 aaPredicted RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 KIAA0753Q2KHM9 967 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 SFMBT2Q5VUG0 894 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 CCDC197Q8NCU1 140 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 ZCRB1Q8TBF4 217 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 TBC1D5Q92609 795 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 CALR3Q96L12 384 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 CNOT10Q9H9A5 744 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 BATF3Q9NR55 127 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 F8VZ95 297 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 SKAP2O75563 359 aaPredicted RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 KIF4AO95239 1232 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 AMPD3Q01432 767 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 EVX2Q03828 476 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 MYO1EQ12965 1108 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 FAM83BQ5T0W9 1011 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 MDM1Q8TC05 714 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 KCNMB3Q9NPA1 279 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 TCP11L1Q9NUJ3 509 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 C15orf41Q9Y2V0 281 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 C1orf167Q5SNV9 1468 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 CACNA1SQ13698 1873 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 A0A0G2JS52 829 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 FGFR1OPO95684 399 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 USP11P51784 963 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 LRRC63Q05C16 580 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 RPS6KA1Q15418 735 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 KRT71Q3SY84 523 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 CHADLQ6NUI6 762 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 TOM1L2Q6ZVM7 507 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 DNAJC10Q8IXB1 793 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 GUF1Q8N442 669 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 CCDC63Q8NA47 563 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 DAGLBQ8NCG7 672 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 CABLES1Q8TDN4 633 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 SEC14L1Q92503 715 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 TAF4BQ92750 862 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 PBKQ96KB5 322 aa11.73□□□□□ -0.53
USP54-204ENST00000422491 MMTAG2Q9BU76 263 aaKnown RBP11.73□□□□□ -0.53
USP54-204ENST00000422491 BTNL10A8MVZ5 291 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 DAPK3O43293 454 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 ITIH4Q14624 930 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 PIGWQ7Z7B1 504 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 PROCA1Q8NCQ7 364 aaPredicted RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 AP1M1Q9BXS5 423 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 DDX47Q9H0S4 455 aaKnown RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 ASAP2O43150 1006 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 CTNND1O60716 968 aaKnown RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 OR52Z1P0C646 297 aa11.72□□□□□ -0.53
USP54-204ENST00000422491 CALRP27797 417 aaKnown RBP11.72□□□□□ -0.53
USP54-204ENST00000422491 DYNLL1P63167 89 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms