RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 PTPN11Q06124 597 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-206ENST00000414829 ITGA7Q13683 1181 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 PRR16Q569H4 304 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 NFRKBQ6P4R8 1299 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 CYFIP1Q7L576 1253 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 HSCBQ8IWL3 235 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 TNPO1Q92973 898 aaKnown RBP16.62■□□□□ 0.25
LIMS1-206ENST00000414829 AGO4Q9HCK5 861 aaKnown RBP16.62■□□□□ 0.25
LIMS1-206ENST00000414829 ATP11BQ9Y2G3 1177 aa16.62■□□□□ 0.25
LIMS1-206ENST00000414829 IGLV3-22A0A075B6J6 115 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 CYP3A7-CYP3A51PA0A087WV96 503 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 FAM86B1E9PN63 330 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 K7ELQ4 463 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-206ENST00000414829 IPO5O00410 1097 aaKnown RBP16.61■□□□□ 0.25
LIMS1-206ENST00000414829 FAM86B2P0C5J1 330 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 SUPT20HL2P0C7V6 817 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 PDCP20941 246 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 CYP3A7P24462 503 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 SP2Q02086 613 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 HSDL1Q3SXM5 330 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 TRIM60Q495X7 471 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 TMEM63BQ5T3F8 832 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 PRPF38BQ5VTL8 546 aaKnown RBP16.61■□□□□ 0.25
LIMS1-206ENST00000414829 PIK3AP1Q6ZUJ8 805 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 C7orf61Q8IZ16 206 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 FBXO18Q8NFZ0 1043 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 SNX21Q969T3 373 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 ZFP91Q96JP5 570 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-206ENST00000414829 ZNF577Q9BSK1 485 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 FOXP1Q9H334 677 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-206ENST00000414829 SLC9A2Q9UBY0 812 aa16.61■□□□□ 0.25
LIMS1-206ENST00000414829 KRT76Q01546 638 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 CUL4AQ13619 759 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 INF2Q27J81 1249 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 Q4G0T1 1027 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 PPP4R3AQ6IN85 833 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 SLC43A3Q8NBI5 491 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 SEPT1Q8WYJ6 367 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 INTS4Q96HW7 963 aaKnown RBP16.6■□□□□ 0.25
LIMS1-206ENST00000414829 RIT2Q99578 217 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 GPR20Q99678 358 aa16.6■□□□□ 0.25
LIMS1-206ENST00000414829 DDX25Q9UHL0 483 aaKnown RBP16.6■□□□□ 0.25
LIMS1-206ENST00000414829 H3BQV1 296 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 PQBP1O60828 265 aaKnown RBP16.59■□□□□ 0.25
LIMS1-206ENST00000414829 CLTBP09497 229 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 PTGS1P23219 599 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 IRX5P78411 483 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-206ENST00000414829 ORC2Q13416 577 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-206ENST00000414829 LETM2Q2VYF4 491 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 SESTD1Q86VW0 696 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 SMAP1Q8IYB5 467 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-206ENST00000414829 CYP2W1Q8TAV3 490 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 AZI2Q9H6S1 392 aa16.59■□□□□ 0.25
LIMS1-206ENST00000414829 BTBD18B2RXH4 712 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 TBX3O15119 743 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 LGALS2P05162 132 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 ARP10275 920 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 GJB2P29033 226 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 TRAPPC10P48553 1259 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 SLC26A2P50443 739 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 CDK7P50613 346 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 SP4Q02446 784 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 TLE2Q04725 743 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 NR5A1Q13285 461 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 MFSD10Q14728 455 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 FAM47CQ5HY64 1035 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 ZNF746Q6NUN9 644 aaPredicted RBP16.58■□□□□ 0.24
LIMS1-206ENST00000414829 C7orf31Q8N865 590 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 OXER1Q8TDS5 423 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 TNFRSF25Q93038 417 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 FAM20AQ96MK3 541 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 MBOAT7Q96N66 472 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 GJB4Q9NTQ9 266 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 PKD2L1Q9P0L9 805 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 NOL7Q9UMY1 257 aaKnown RBP16.58■□□□□ 0.24
LIMS1-206ENST00000414829 EMSYQ7Z589 1322 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 KIAA1217Q5T5P2 1943 aa16.58■□□□□ 0.24
LIMS1-206ENST00000414829 H3BRB1 525 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 ADAMTS3O15072 1205 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 CCNT1O60563 726 aaKnown RBP16.57■□□□□ 0.24
LIMS1-206ENST00000414829 GAS7O60861 476 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 ATP9AO75110 1047 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 ZNF286BP0CG31 522 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 GNAT1P11488 350 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 SFNP31947 248 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 TCF7P36402 384 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-206ENST00000414829 PSEN2P49810 448 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 FOSBP53539 338 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 NBPF20Q3BBV1 942 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 MIS18BP1Q6P0N0 1132 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 NOSTRINQ8IVI9 506 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 FAM126BQ8IXS8 530 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 SLFN12Q8IYM2 578 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 RDM1Q8NG50 284 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 LENG9Q96B70 501 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 LBHD1Q9BQE6 289 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-206ENST00000414829 TEKT3Q9BXF9 490 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 SMARCAD1Q9H4L7 1026 aa16.57■□□□□ 0.24
LIMS1-206ENST00000414829 TUT1Q9H6E5 874 aaKnown RBP16.57■□□□□ 0.24
LIMS1-206ENST00000414829 ERAP1Q9NZ08 941 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms