RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 CELF3Q5SZQ8 465 aaKnown RBP11.15□□□□□ -0.62
RFFL-203ENST00000413582 DGKHQ86XP1 1220 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 PNMA1Q8ND90 353 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 ATP6V0A1Q93050 837 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 EVI5LQ96CN4 794 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 PHOX2BQ99453 314 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 PDCD2LQ9BRP1 358 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 ZKSCAN3Q9BRR0 538 aa11.15□□□□□ -0.62
RFFL-203ENST00000413582 IFIH1Q9BYX4 1025 aaKnown RBP11.15□□□□□ -0.62
RFFL-203ENST00000413582 UPF3BQ9BZI7 483 aaKnown RBP11.15□□□□□ -0.62
RFFL-203ENST00000413582 MRPL11Q9Y3B7 192 aaKnown RBP11.15□□□□□ -0.62
RFFL-203ENST00000413582 CFAP54Q96N23 3096 aa11.15□□□□□ -0.63
RFFL-203ENST00000413582 TTC3P53804 2025 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 KIAA1671Q9BY89 1806 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 CCDC171Q6TFL3 1326 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 C5orf67F2Z3F1 127 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 TREHO43280 583 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 MBTPS2O43462 519 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 NCK2O43639 380 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 CAND2O75155 1236 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 TBX10O75333 385 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 GGPS1O95749 300 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 CTSHP09668 335 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 SMIM10L2AP0DMW4 78 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 SMIM10L2BP0DMW5 78 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 CTNNB1P35222 781 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 HSD17B4P51659 736 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 HYAL1Q12794 435 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 AAMPQ13685 434 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 CLUL1Q15846 466 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 MCMDC2Q4G0Z9 681 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 ASPRV1Q53RT3 343 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 MFSD6Q6ZSS7 791 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 PRSS33Q8NF86 280 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 IL31RAQ8NI17 732 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 MFSD14AQ96MC6 490 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 POP1Q99575 1024 aaKnown RBP11.14□□□□□ -0.63
RFFL-203ENST00000413582 RC3H2Q9HBD1 1191 aaKnown RBP11.14□□□□□ -0.63
RFFL-203ENST00000413582 KAT6AQ92794 2004 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 USP34Q70CQ2 3546 aa11.14□□□□□ -0.63
RFFL-203ENST00000413582 SPDYE4A6NLX3 237 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 GRM6O15303 877 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 CFBP00751 764 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 LGALS2P05162 132 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 SP2Q02086 613 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 SMAD4Q13485 552 aaKnown RBP11.13□□□□□ -0.63
RFFL-203ENST00000413582 KCNV1Q6PIU1 500 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 ESR2Q92731 530 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 GPKOWQ92917 476 aaPredicted RBP eCLIP11.13□□□□□ -0.63
RFFL-203ENST00000413582 C11orf84Q9BUA3 381 aaPredicted RBP11.13□□□□□ -0.63
RFFL-203ENST00000413582 LMAN2LQ9H0V9 348 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 RNF41Q9H4P4 317 aaPredicted RBP11.13□□□□□ -0.63
RFFL-203ENST00000413582 JMJD4Q9H9V9 463 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 PCDHB15Q9Y5E8 787 aa11.13□□□□□ -0.63
RFFL-203ENST00000413582 BAZ2BQ9UIF8 2168 aaKnown RBP11.13□□□□□ -0.63
RFFL-203ENST00000413582 ADGRA3Q8IWK6 1321 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 PTPRZ1P23471 2315 aaPredicted RBP11.12□□□□□ -0.63
RFFL-203ENST00000413582 H3BRB1 525 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 DHX16O60231 1041 aaKnown RBP11.12□□□□□ -0.63
RFFL-203ENST00000413582 RB1P06400 928 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 MYCLP12524 364 aaPredicted RBP11.12□□□□□ -0.63
RFFL-203ENST00000413582 GTF2F1P35269 517 aaKnown RBP eCLIP11.12□□□□□ -0.63
RFFL-203ENST00000413582 NMIQ13287 307 aaPredicted RBP11.12□□□□□ -0.63
RFFL-203ENST00000413582 PGM5Q15124 567 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 STOX1Q6ZVD7 989 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 RNF135Q8IUD6 432 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 FIBCD1Q8N539 461 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 APBB2Q92870 758 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 IL17RAQ96F46 866 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 RNPEPQ9H4A4 650 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 TUT1Q9H6E5 874 aaKnown RBP11.12□□□□□ -0.63
RFFL-203ENST00000413582 KAT14Q9H8E8 782 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 SPTBN4Q9H254 2564 aa11.12□□□□□ -0.63
RFFL-203ENST00000413582 STXBP3O00186 592 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 LINC01565O15544 149 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 PPP1R11O60927 126 aaPredicted RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 KDM4AO75164 1064 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 MMP1P03956 469 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 TGFB3P10600 412 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 HOXA13P31271 388 aaPredicted RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 BMPR1AP36894 532 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 NT5C2P49902 561 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 FAM26DQ5JW98 314 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 IER5LQ5T953 404 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 BMP8AQ7Z5Y6 402 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 VSIG10LQ86VR7 867 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 IQCA1Q86XH1 822 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 ENAHQ8N8S7 591 aaPredicted RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 EDAQ92838 391 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 CLP1Q92989 425 aaKnown RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 AMNQ9BXJ7 453 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 BCAS3Q9H6U6 928 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 CD207Q9UJ71 328 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 RWDD3Q9Y3V2 267 aa11.11□□□□□ -0.63
RFFL-203ENST00000413582 RIF1Q5UIP0 2472 aaKnown RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 ZFHX2Q9C0A1 2572 aaPredicted RBP11.11□□□□□ -0.63
RFFL-203ENST00000413582 FAM186AA6NE01 2351 aa11.1□□□□□ -0.63
RFFL-203ENST00000413582 CSPG5O95196 566 aa11.1□□□□□ -0.63
RFFL-203ENST00000413582 PARP1P09874 1014 aaKnown RBP11.1□□□□□ -0.63
RFFL-203ENST00000413582 CCND2P30279 289 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms