RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ATG7O95352 703 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 ARIH2O95376 493 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 SYN1P17600 705 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 RXRAP19793 462 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 ZNF76P36508 570 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 FXR1P51114 621 aaKnown RBP eCLIP7.29□□□□□ -1.24
USP54-202ENST00000413442 PKN1Q16512 942 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 HSDL1Q3SXM5 330 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 WWC2Q6AWC2 1192 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 PLPPR4Q7Z2D5 763 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 SKAP1Q86WV1 359 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 REXO1Q8N1G1 1221 aaKnown RBP7.29□□□□□ -1.24
USP54-202ENST00000413442 CMTR1Q8N1G2 835 aaKnown RBP7.29□□□□□ -1.24
USP54-202ENST00000413442 DAGLBQ8NCG7 672 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 PHOSPHO2Q8TCD6 241 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 BADQ92934 168 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 ERAP1Q9NZ08 941 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 GTF2IRD1Q9UHL9 959 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 TCEAL9Q9UHQ7 104 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 SQORQ9Y6N5 450 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 EMSYQ7Z589 1322 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 B4GALT4O60513 344 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 BAIAP3O94812 1187 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 ITGB5P18084 799 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 UBA1P22314 1058 aaKnown RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 HOXC8P31273 242 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 MCM2P49736 904 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 RBM25P49756 843 aaKnown RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 PSEN2P49810 448 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 NEK4P51957 841 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 NLRP5P59047 1200 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 ARHGAP4P98171 946 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 CDC42EP1Q00587 391 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 MDM2Q00987 491 aaPredicted RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 SP2Q02086 613 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 MFSD10Q14728 455 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 PTGISQ16647 500 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 KIAA0753Q2KHM9 967 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 CYFIP1Q7L576 1253 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 SH3RF1Q7Z6J0 888 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 RSPH3Q86UC2 560 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 SMAP1Q8IYB5 467 aaPredicted RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 NME8Q8N427 588 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 USP38Q8NB14 1042 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 RDM1Q8NG50 284 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 CRYGNQ8WXF5 182 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 PIBF1Q8WXW3 757 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 HERVK_113Q902F9 699 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 KAT2BQ92831 832 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 LENG1Q96BZ8 264 aaPredicted RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 TCEANC2Q96MN5 208 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 RIT2Q99578 217 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 GPR20Q99678 358 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 LLPHQ9BRT6 129 aaKnown RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 C16orf70Q9BSU1 422 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 NOC4LQ9BVI4 516 aaKnown RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 SLC26A6Q9BXS9 759 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 ANO3Q9BYT9 981 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 AZI2Q9H6S1 392 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 BRMS1Q9HCU9 246 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 SH2B1Q9NRF2 756 aaPredicted RBP7.28□□□□□ -1.24
USP54-202ENST00000413442 KCNH7Q9NS40 1196 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 RTEL1Q9NZ71 1219 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 SLC9A2Q9UBY0 812 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 PCDHA4Q9UN74 947 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 LIMCH1Q9UPQ0 1083 aa7.28□□□□□ -1.24
USP54-202ENST00000413442 MKI67P46013 3256 aaKnown RBP7.27□□□□□ -1.25
USP54-202ENST00000413442 CYP3A7-CYP3A51PA0A087WV96 503 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 ABHD14A-ACY1A0A1B0GW23 586 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 C17orf102A2RUQ5 167 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 TBX3O15119 743 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 DKC1O60832 514 aaKnown RBP eCLIP7.27□□□□□ -1.25
USP54-202ENST00000413442 LGR5O75473 907 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 IQCF3P0C7M6 154 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 SELPP16109 830 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 GCFC2P16383 781 aaKnown RBP7.27□□□□□ -1.25
USP54-202ENST00000413442 KCNA2P16389 499 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 CYP3A7P24462 503 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 SFNP31947 248 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 KRT76Q01546 638 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 FAM47CQ5HY64 1035 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 ODR4Q5SWX8 454 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 RASIP1Q5U651 963 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 FAM160B1Q5W0V3 765 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 PPP4R3AQ6IN85 833 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 ZNF746Q6NUN9 644 aaPredicted RBP7.27□□□□□ -1.25
USP54-202ENST00000413442 TAF2Q6P1X5 1199 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 POTEHQ6S545 545 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 KRT25Q7Z3Z0 450 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 EXOC8Q8IYI6 725 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 BLIDQ8IZY5 108 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 COPS5Q92905 334 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 GPKOWQ92917 476 aaPredicted RBP eCLIP7.27□□□□□ -1.25
USP54-202ENST00000413442 JPH1Q9HDC5 661 aaPredicted RBP7.27□□□□□ -1.25
USP54-202ENST00000413442 HDAC6Q9UBN7 1215 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 KIF3AQ9Y496 699 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 BRCA2P51587 3418 aa7.27□□□□□ -1.25
USP54-202ENST00000413442 DNAH12Q6ZR08 3092 aa7.26□□□□□ -1.25
USP54-202ENST00000413442 MYH9P35579 1960 aaKnown RBP7.26□□□□□ -1.25
USP54-202ENST00000413442 TRIP12Q14669 1992 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms