RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SUGCTQ9HAC7 445 aa32.92■■■□□ 2.86
HMGB1-205ENST00000399494 RAPGEFL1Q9UHV5 662 aa32.92■■■□□ 2.86
HMGB1-205ENST00000399494 TAF6LQ9Y6J9 622 aa32.92■■■□□ 2.86
HMGB1-205ENST00000399494 H3BRB1 525 aa32.91■■■□□ 2.86
HMGB1-205ENST00000399494 HOXC8P31273 242 aa32.91■■■□□ 2.86
HMGB1-205ENST00000399494 LIN28BQ6ZN17 250 aaKnown RBP eCLIP32.91■■■□□ 2.86
HMGB1-205ENST00000399494 TUT1Q9H6E5 874 aaKnown RBP32.91■■■□□ 2.86
HMGB1-205ENST00000399494 ERICH2A1L162 156 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 RSPH10B2B2RC85 870 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 SLC27A2O14975 620 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 RSPH10BP0C881 870 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 THPOP40225 353 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 MRPS9P82933 396 aaKnown RBP32.9■■■□□ 2.86
HMGB1-205ENST00000399494 MKRN4PQ13434 485 aaPredicted RBP32.9■■■□□ 2.86
HMGB1-205ENST00000399494 WTAPQ15007 396 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 RNF20Q5VTR2 975 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 CREB3L3Q68CJ9 461 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 FAM117BQ6P1L5 589 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 DBF4BQ8NFT6 615 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 MTUS1Q9ULD2 1270 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 EMSYQ7Z589 1322 aa32.9■■■□□ 2.86
HMGB1-205ENST00000399494 BAZ2BQ9UIF8 2168 aaKnown RBP32.89■■■□□ 2.86
HMGB1-205ENST00000399494 C17orf102A2RUQ5 167 aa32.89■■■□□ 2.86
HMGB1-205ENST00000399494 ATP6V0A1Q93050 837 aa32.89■■■□□ 2.86
HMGB1-205ENST00000399494 RNPEPQ9H4A4 650 aa32.89■■■□□ 2.86
HMGB1-205ENST00000399494 COL4A4P53420 1690 aaPredicted RBP32.88■■■□□ 2.85
HMGB1-205ENST00000399494 LGALS2P05162 132 aa32.88■■■□□ 2.85
HMGB1-205ENST00000399494 ICAM3P32942 547 aa32.88■■■□□ 2.85
HMGB1-205ENST00000399494 NECTIN1Q15223 517 aa32.88■■■□□ 2.85
HMGB1-205ENST00000399494 INPP4AQ96PE3 977 aaPredicted RBP32.88■■■□□ 2.85
HMGB1-205ENST00000399494 INSL6Q9Y581 213 aa32.88■■■□□ 2.85
HMGB1-205ENST00000399494 FRMPD4Q14CM0 1322 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 SPATA31C2B4DYI2 1134 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 SMIM10L2AP0DMW4 78 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 SMIM10L2BP0DMW5 78 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 PLEKHG4Q58EX7 1191 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 IGDCC4Q8TDY8 1250 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 USP26Q9BXU7 913 aa32.87■■■□□ 2.85
HMGB1-205ENST00000399494 TREHO43280 583 aa32.86■■■□□ 2.85
HMGB1-205ENST00000399494 STAM2O75886 525 aa32.86■■■□□ 2.85
HMGB1-205ENST00000399494 SART3Q15020 963 aaKnown RBP32.86■■■□□ 2.85
HMGB1-205ENST00000399494 GNPTABQ3T906 1256 aa32.86■■■□□ 2.85
HMGB1-205ENST00000399494 C1QTNF1Q9BXJ1 281 aa32.86■■■□□ 2.85
HMGB1-205ENST00000399494 ANTXR2P58335 489 aa32.85■■■□□ 2.85
HMGB1-205ENST00000399494 HTRA4P83105 476 aaPredicted RBP32.85■■■□□ 2.85
HMGB1-205ENST00000399494 SEMA3FQ13275 785 aa32.85■■■□□ 2.85
HMGB1-205ENST00000399494 NEDD9Q14511 834 aa32.85■■■□□ 2.85
HMGB1-205ENST00000399494 CYFIP1Q7L576 1253 aa32.85■■■□□ 2.85
HMGB1-205ENST00000399494 RTEL1Q9NZ71 1219 aa32.85■■■□□ 2.85
HMGB1-205ENST00000399494 REC8O95072 547 aa32.84■■■□□ 2.85
HMGB1-205ENST00000399494 AMHP03971 560 aa32.84■■■□□ 2.85
HMGB1-205ENST00000399494 CATIPQ7Z7H3 387 aa32.84■■■□□ 2.85
HMGB1-205ENST00000399494 PIBF1Q8WXW3 757 aa32.84■■■□□ 2.85
HMGB1-205ENST00000399494 OSBPL7Q9BZF2 842 aa32.84■■■□□ 2.85
HMGB1-205ENST00000399494 NOP56O00567 594 aaKnown RBP32.83■■■□□ 2.85
HMGB1-205ENST00000399494 METTL7BQ6UX53 244 aa32.83■■■□□ 2.85
HMGB1-205ENST00000399494 GPR20Q99678 358 aa32.83■■■□□ 2.85
HMGB1-205ENST00000399494 MB21D2Q8IYB1 491 aaPredicted RBP32.82■■■□□ 2.84
HMGB1-205ENST00000399494 MYOCDQ8IZQ8 938 aa32.82■■■□□ 2.84
HMGB1-205ENST00000399494 SP7Q8TDD2 431 aaPredicted RBP32.82■■■□□ 2.84
HMGB1-205ENST00000399494 C17orf80Q9BSJ5 609 aa32.82■■■□□ 2.84
HMGB1-205ENST00000399494 SETD4Q9NVD3 440 aa32.82■■■□□ 2.84
HMGB1-205ENST00000399494 TELO2Q9Y4R8 837 aa32.82■■■□□ 2.84
HMGB1-205ENST00000399494 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP32.81■■■□□ 2.84
HMGB1-205ENST00000399494 FIBPO43427 364 aa32.81■■■□□ 2.84
HMGB1-205ENST00000399494 MAP3K14Q99558 947 aa32.81■■■□□ 2.84
HMGB1-205ENST00000399494 EPHX3Q9H6B9 360 aa32.81■■■□□ 2.84
HMGB1-205ENST00000399494 SIP14410 1827 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 CAND2O75155 1236 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 USP17L6PQ6QN14 398 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 FBXO22Q8NEZ5 403 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 SEPT8Q92599 483 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 SPZ1Q9BXG8 430 aa32.8■■■□□ 2.84
HMGB1-205ENST00000399494 GNAT1P11488 350 aa32.79■■■□□ 2.84
HMGB1-205ENST00000399494 MCM5P33992 734 aa32.79■■■□□ 2.84
HMGB1-205ENST00000399494 ADAM17P78536 824 aa32.79■■■□□ 2.84
HMGB1-205ENST00000399494 TOP1MTQ969P6 601 aa32.79■■■□□ 2.84
HMGB1-205ENST00000399494 SENP7Q9BQF6 1050 aa32.79■■■□□ 2.84
HMGB1-205ENST00000399494 MICAL3Q7RTP6 2002 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 MEIS2O14770 477 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 SMARCA1P28370 1054 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 PCNX4Q63HM2 1172 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 XRRA1Q6P2D8 792 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 SMARCC2Q8TAQ2 1214 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 RRP36Q96EU6 259 aaKnown RBP32.78■■■□□ 2.84
HMGB1-205ENST00000399494 UBE2ZQ9H832 354 aaPredicted RBP32.78■■■□□ 2.84
HMGB1-205ENST00000399494 LY9Q9HBG7 655 aa32.78■■■□□ 2.84
HMGB1-205ENST00000399494 LOC101059915A0A1B0GWI6 518 aaPredicted RBP32.77■■■□□ 2.84
HMGB1-205ENST00000399494 PIK3CDO00329 1044 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 PRC1O43663 620 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 CTSHP09668 335 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 UTP14CQ5TAP6 766 aaKnown RBP32.77■■■□□ 2.84
HMGB1-205ENST00000399494 TRIM50Q86XT4 487 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 ZNF654Q8IZM8 581 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 MYL10Q9BUA6 226 aa32.77■■■□□ 2.84
HMGB1-205ENST00000399494 FAM26DQ5JW98 314 aa32.76■■■□□ 2.83
HMGB1-205ENST00000399494 CUL5Q93034 780 aa32.76■■■□□ 2.83
HMGB1-205ENST00000399494 DOCK5Q9H7D0 1870 aa32.76■■■□□ 2.83
HMGB1-205ENST00000399494 KRT32Q14532 448 aa32.75■■■□□ 2.83
HMGB1-205ENST00000399494 EPC2Q52LR7 807 aa32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms