RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 PPP2R3AQ06190 1150 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 VGLL4Q14135 290 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 KCNJ12Q14500 433 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 CHADLQ6NUI6 762 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 GRAMD1CQ8IYS0 662 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 POMGNT1Q8WZA1 660 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 GJA10Q969M2 543 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 DYDC2Q96IM9 177 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 SPATA33Q96N06 139 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 C5P01031 1676 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 ALDH1A1P00352 501 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 DSG3P32926 999 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 YARSP54577 528 aaKnown RBP9.12□□□□□ -0.95
PTPRD-204ENST00000397606 TATDN1Q6P1N9 297 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 RAET1EQ8TD07 263 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 NUDT12Q9BQG2 462 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PITPNM2Q9BZ72 1349 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 SLC26A4O43511 780 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 FGRP09769 529 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 CCDC175P0C221 793 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 BCRP11274 1271 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PTGS1P23219 599 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 MARK3P27448 753 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 OAZ1P54368 228 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 FKBP3Q00688 224 aaKnown RBP9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PROCA1Q8NCQ7 364 aaPredicted RBP9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PIGOQ8TEQ8 1089 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 P2RX5Q93086 422 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 WDR18Q9BV38 432 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 CCSER1Q9C0I3 900 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 ATP6V0A4Q9HBG4 840 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 GABBR1Q9UBS5 961 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 FAM205CA6NFA0 338 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 CASQ1P31415 396 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 ZNF75DP51815 510 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 CACNB1Q02641 598 aaPredicted RBP9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PPIL2Q13356 520 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 SWSAP1Q6NVH7 229 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 UNC13DQ70J99 1090 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 ANKRD13CQ8N6S4 541 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 BANK1Q8NDB2 785 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 SMC1BQ8NDV3 1235 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 RAD54LQ92698 747 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 RIT2Q99578 217 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 MXRA8Q9BRK3 442 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 EMILIN3Q9NT22 766 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 MAN1B1Q9UKM7 699 aa9.12□□□□□ -0.95
PTPRD-204ENST00000397606 PHLPP2Q6ZVD8 1323 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 PVALEFA0A1B0GWK0 134 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 POTEB3A0JP26 581 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 POTECB2RU33 542 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 SEMA3FQ13275 785 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 GLIPR1L2Q4G1C9 344 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 POTEBQ6S5H4 581 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 PADI6Q6TGC4 694 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 DDX12PQ92771 950 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 EIF2AK1Q9BQI3 630 aaKnown RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 LXNQ9BS40 222 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 NUCKS1Q9H1E3 243 aaKnown RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 ACBD3Q9H3P7 528 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 TAF1DQ9H5J8 278 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 TUFT1Q9NNX1 390 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 IMPACTQ9P2X3 320 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 FBXO2Q9UK22 296 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 IKBKBO14920 756 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 MYL3P08590 195 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 MAPK4P31152 587 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 PAFAH1B1P43034 410 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 HERVK_113P62684 666 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 KIF5AQ12840 1032 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 FMR1NBQ8N0W7 255 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 RUFY1Q96T51 708 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 KRT5P13647 590 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 P4HA1P13674 534 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 NR2F2P24468 414 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 CA8P35219 290 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 SNW1Q13573 536 aaKnown RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 MOXD1Q6UVY6 613 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 SCFD2Q8WU76 684 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 GBP3Q9H0R5 595 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 FANCLQ9NW38 375 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 BTAF1O14981 1849 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 TMCO5BA8MYB1 307 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 KRT86O43790 486 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 EIF3JO75822 258 aaKnown RBP9.11□□□□□ -0.95
PTPRD-204ENST00000397606 ERCC3P19447 782 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 SLC8A3P57103 927 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 KMT5BQ4FZB7 885 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 NLRP7Q8WX94 980 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 PLVAPQ9BX97 442 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 ANKFY1Q9P2R3 1169 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 C10orf71Q711Q0 1435 aa9.11□□□□□ -0.95
PTPRD-204ENST00000397606 E9PMD0 336 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 GGPS1O95749 300 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 TNNC2P02585 160 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 KRT19P08727 400 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 CCNE1P24864 410 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 FCGRTP55899 365 aa9.1□□□□□ -0.95
PTPRD-204ENST00000397606 GABPAQ06546 454 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms