RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 SP4Q02446 784 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 ITGB3BPQ13352 177 aaPredicted RBP17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 TRIM29Q14134 588 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 NONOQ15233 471 aaKnown RBP eCLIP17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 BRDTQ58F21 947 aaPredicted RBP17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 METTL7BQ6UX53 244 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 DIS3L2Q8IYB7 885 aaKnown RBP17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 FAM184AQ8NB25 1140 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 LENG9Q96B70 501 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 C8orf76Q96K31 380 aa17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 AGO4Q9HCK5 861 aaKnown RBP17.16■□□□□ 0.34
SMPDL3A-201ENST00000368440 PDE4DIPQ5VU43 2346 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 CCDC194A0A1B0GVG4 234 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 ZNF286BP0CG31 522 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 C1orf53Q5VUE5 145 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 PIK3AP1Q6ZUJ8 805 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 NIPA1Q7RTP0 329 aa17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 MTG1Q9BT17 334 aaPredicted RBP17.15■□□□□ 0.34
SMPDL3A-201ENST00000368440 A0A0U1RQG5 324 aaPredicted RBP17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 MAFGO15525 162 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 CABYRO75952 493 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 TDP2O95551 362 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 HOXD8P13378 290 aaPredicted RBP17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 GJB2P29033 226 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 USP11P51784 963 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 CUL4AQ13619 759 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 DGKDQ16760 1214 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 PRR16Q569H4 304 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 KAT2BQ92831 832 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 GPR20Q99678 358 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 CDK7P50613 346 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 TLE2Q04725 743 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 ITGA7Q13683 1181 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 SLC43A3Q8NBI5 491 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 BRMS1Q9HCU9 246 aa17.14■□□□□ 0.33
SMPDL3A-201ENST00000368440 LTBP2Q14767 1821 aa17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 ARVCFO00192 962 aa17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 NOP56O00567 594 aaKnown RBP17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 KPNA6O60684 536 aa17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 PQBP1O60828 265 aaKnown RBP17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 GIMAP8Q8ND71 665 aaPredicted RBP17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 FBXO18Q8NFZ0 1043 aa17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 ZMYND8Q9ULU4 1186 aaPredicted RBP17.13■□□□□ 0.33
SMPDL3A-201ENST00000368440 NFASCO94856 1347 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 DDX39AO00148 427 aaKnown RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 SYN1P17600 705 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 CHMP4BP1P59074 171 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 SETQ01105 290 aaPredicted RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 LETM2Q2VYF4 491 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 NBPF20Q3BBV1 942 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 GSTTP1A0A1W2PQM5 241 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 H0YGN5 161 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 IPO5O00410 1097 aaKnown RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 DHX15O43143 795 aaKnown RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 PPFIA4O75335 1185 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 F2P00734 622 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 LGALS2P05162 132 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 NEK8Q86SG6 692 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 TRIM50Q86XT4 487 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 GJA10Q969M2 543 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 MBOAT7Q96N66 472 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 ZNF577Q9BSK1 485 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 C16orf70Q9BSU1 422 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 JPH1Q9HDC5 661 aaPredicted RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 SLC9A2Q9UBY0 812 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 DAXXQ9UER7 740 aaPredicted RBP17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 SMC3Q9UQE7 1217 aa17.12■□□□□ 0.33
SMPDL3A-201ENST00000368440 CYP3A7-CYP3A51PA0A087WV96 503 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 KIF28PB7ZC32 967 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 K7ELQ4 463 aaPredicted RBP17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 WNT7AO00755 349 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 MSH4O15457 936 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 SLC37A4O43826 429 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 CYP3A7P24462 503 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 ANKRD33Q7Z3H0 272 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 SH3RF1Q7Z6J0 888 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 FAM126BQ8IXS8 530 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 SDF4Q9BRK5 362 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 PDLIM7Q9NR12 457 aa17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.11■□□□□ 0.33
SMPDL3A-201ENST00000368440 CCNE2O96020 404 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 TCF7P36402 384 aaPredicted RBP17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 PSEN2P49810 448 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 FAAP100Q0VG06 881 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 Q4G0T1 1027 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 UTP14CQ5TAP6 766 aaKnown RBP17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 SNX21Q969T3 373 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 NR2E3Q9Y5X4 410 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 WDR81Q562E7 1941 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 HAS3O00219 553 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 MFSD10Q14728 455 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 SAFBQ15424 915 aaKnown RBP eCLIP17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 FAM47CQ5HY64 1035 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 MOXD1Q6UVY6 613 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 TRPV6Q9H1D0 765 aa17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 PRDM5Q9NQX1 630 aaPredicted RBP17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 DDX25Q9UHL0 483 aaKnown RBP17.1■□□□□ 0.33
SMPDL3A-201ENST00000368440 B4GALT4O60513 344 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 CCNT1O60563 726 aaKnown RBP17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 ACTR2P61160 394 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms