RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 ZBED2Q9BTP6 218 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 RTEL1Q9NZ71 1219 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 BRWD1Q9NSI6 2320 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 C17orf102A2RUQ5 167 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 NOP56O00567 594 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 PRC1O43663 620 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 EFCAB14O75071 495 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 GJB5O95377 273 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 KIF5BP33176 963 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 GRB10Q13322 594 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 NEDD9Q14511 834 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 USP17L6PQ6QN14 398 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 METTL7BQ6UX53 244 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 CYFIP1Q7L576 1253 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 SMARCC2Q8TAQ2 1214 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 CUL5Q93034 780 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 ATP6V0A1Q93050 837 aa16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 LSG1Q9H089 658 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-201ENST00000354363 PIK3CDO00329 1044 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SH2B2O14492 632 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 MEIS2O14770 477 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 FIBPO43427 364 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 LPXNO60711 386 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 LGR5O75473 907 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 PLEKHA8P1O95397 391 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SMIM10L2AP0DMW4 78 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SMIM10L2BP0DMW5 78 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 THPOP40225 353 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 TFF2Q03403 129 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 COL9A3Q14050 684 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SKIV2LQ15477 1246 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 PCNX4Q63HM2 1172 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SRBD1Q8N5C6 995 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 IL27Q8NEV9 243 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 RAD9AQ99638 391 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 GPR20Q99678 358 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 LZTS2Q9BRK4 669 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 USP26Q9BXU7 913 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 RNPEPQ9H4A4 650 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 SEC63Q9UGP8 760 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 EMSYQ7Z589 1322 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 NLRC5Q86WI3 1866 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 XIRP2A4UGR9 3374 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 RSPH10B2B2RC85 870 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 TREHO43280 583 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 RSPH10BP0C881 870 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 MCM5P33992 734 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 GNAQP50148 359 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 NFXL1Q6ZNB6 911 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 TMTC2Q8N394 836 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 TMEM87BQ96K49 555 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 UHRF1Q96T88 793 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 TELO2Q9Y4R8 837 aa16.67■□□□□ 0.26
PRPF40A-201ENST00000354363 CCDC69A6NI79 296 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 SLC27A2O14975 620 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 BMP1P13497 986 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 MKRN4PQ13434 485 aaPredicted RBP16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 XRRA1Q6P2D8 792 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.66■□□□□ 0.261e-7■■■■■ 28.2
PRPF40A-201ENST00000354363 DBF4BQ8NFT6 615 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 ESYT1Q9BSJ8 1104 aa16.66■□□□□ 0.26
PRPF40A-201ENST00000354363 RXRAP19793 462 aa16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 FAM117BQ6P1L5 589 aa16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 TRIM50Q86XT4 487 aa16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 CMTR1Q8N1G2 835 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 GDPD5Q8WTR4 605 aa16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 SENP7Q9BQF6 1050 aa16.65■□□□□ 0.26
PRPF40A-201ENST00000354363 LINC01553A4QN01 128 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 LIFRP42702 1097 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 KCNQ1P51787 676 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 ERVK-21P61565 698 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 AAK1Q2M2I8 961 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 PLEKHG4Q58EX7 1191 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 UTP14CQ5TAP6 766 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 CREB3L3Q68CJ9 461 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 TGS1Q96RS0 853 aaKnown RBP16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 SETD4Q9NVD3 440 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 LOXHD1Q8IVV2 1947 aa16.64■□□□□ 0.25
PRPF40A-201ENST00000354363 CAND2O75155 1236 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 CALM1P0DP23 149 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 CALM2P0DP24 149 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 CALM3P0DP25 149 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 SP4Q02446 784 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 NECTIN1Q15223 517 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 NLRX1Q86UT6 975 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 RAB11FIP4Q86YS3 637 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 NECAB3Q96P71 396 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 LRRC2Q9BYS8 371 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 OSBPL7Q9BZF2 842 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 PSTPIP2Q9H939 334 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 LMCD1Q9NZU5 365 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 ZNF215Q9UL58 517 aaPredicted RBP16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 MTUS1Q9ULD2 1270 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 COG5Q9UP83 839 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 AMHP03971 560 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 CTSHP09668 335 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 GNAT1P11488 350 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 ADAM17P78536 824 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 GPRASP2Q96D09 838 aa16.63■□□□□ 0.25
PRPF40A-201ENST00000354363 SUGCTQ9HAC7 445 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms