RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS39-202ENST00000348544 GPKOWQ92917 476 aaPredicted RBP eCLIP7.46□□□□□ -1.22
VPS39-202ENST00000348544 LRRC45Q96CN5 670 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 SPDL1Q96EA4 605 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 RSRC1Q96IZ7 334 aaKnown RBP7.46□□□□□ -1.22
VPS39-202ENST00000348544 L3MBTL3Q96JM7 780 aaPredicted RBP7.46□□□□□ -1.22
VPS39-202ENST00000348544 ZNF317Q96PQ6 595 aaPredicted RBP7.46□□□□□ -1.22
VPS39-202ENST00000348544 MTFR1LQ9H019 292 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 KIF9Q9HAQ2 790 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 NLRC4Q9NPP4 1024 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 AGAP1Q9UPQ3 857 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 LRP5O75197 1615 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 PAPPAQ13219 1627 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 MYH1P12882 1939 aa7.46□□□□□ -1.22
VPS39-202ENST00000348544 DDAH1O94760 285 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 NOL4O94818 638 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ANP32DO95626 131 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 SEMA3FQ13275 785 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 RIPK1Q13546 671 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ZKSCAN8Q15776 578 aaPredicted RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 CRELD2Q6UXH1 353 aaPredicted RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 KRT28Q7Z3Y7 464 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CCDC197Q8NCU1 140 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 AGAP11Q8TF27 550 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 TLCD1Q96CP7 247 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CHMP6Q96FZ7 201 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 C7orf25Q9BPX7 421 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 AP1M1Q9BXS5 423 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 FAM129AQ9BZQ8 928 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 DDX47Q9H0S4 455 aaKnown RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 PANK4Q9NVE7 773 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 BAZ2AQ9UIF9 1905 aaKnown RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 A0A087X0T9 212 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 F8VZ95 297 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 M0R2N6 131 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 KCNK3O14649 394 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 SART1O43290 800 aaKnown RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 DAPK3O43293 454 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CLTAP09496 248 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 FAM228BP0C875 321 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 GCKP35557 465 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 BCAMP50895 628 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 PTPROQ16827 1216 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 INF2Q27J81 1249 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 LRRC55Q6ZSA7 311 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 TBC1D1Q86TI0 1168 aaPredicted RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 CCDC84Q86UT8 332 aaPredicted RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 PNMA8AQ86V59 439 aaPredicted RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 NLRP10Q86W26 655 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CCDC63Q8NA47 563 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 PSMD1Q99460 953 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 PNMA2Q9UL42 364 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 TRPC6Q9Y210 931 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CTNND1O60716 968 aaKnown RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 SMNDC1O75940 238 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS39-202ENST00000348544 CALM1P0DP23 149 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CALM2P0DP24 149 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CALM3P0DP25 149 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ITGA4P13612 1032 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CHRNA2Q15822 529 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 TXNRD1Q16881 649 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 KRT71Q3SY84 523 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 COBLL1Q53SF7 1204 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CACNA2D4Q7Z3S7 1137 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 PIGWQ7Z7B1 504 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 CABP7Q86V35 215 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ARMC2Q8NEN0 867 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ATXN2LQ8WWM7 1075 aaKnown RBP7.45□□□□□ -1.22
VPS39-202ENST00000348544 TBC1D5Q92609 795 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ACSBG1Q96GR2 724 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 ADAM7Q9H2U9 754 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 BATF3Q9NR55 127 aa7.45□□□□□ -1.22
VPS39-202ENST00000348544 MYH3P11055 1940 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CICQ96RK0 1608 aaPredicted RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 TNS2Q63HR2 1409 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ADAMTSL3P82987 1691 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 RREB1Q92766 1687 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 IRS4O14654 1257 aaPredicted RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 CAND2O75155 1236 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 KIF4AO95239 1232 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SERPING1P05155 500 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 GSTA1P08263 222 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ALADP13716 330 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CYP7A1P22680 504 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PDE6BP35913 854 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PEX19P40855 299 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 KCNJ2P63252 427 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 KIAA0753Q2KHM9 967 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 DNAAF5Q86Y56 855 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PROM2Q8N271 834 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 GLIS3Q8NEA6 775 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ANKS1AQ92625 1134 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CENPTQ96BT3 561 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 EPB41L4BQ9H329 900 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ABCF3Q9NUQ8 709 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 AMACRQ9UHK6 382 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PCDHA6Q9UN73 950 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PCDHA4Q9UN74 947 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ATP6V0A2Q9Y487 856 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PCDHA8Q9Y5H6 950 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms