RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 UBIAD1Q9Y5Z9 338 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 CYP46A1Q9Y6A2 500 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 SMCO2A6NFE2 343 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 RBAK-RBAKDNI3L0D1 243 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 NOP56O00567 594 aaKnown RBP18.68■□□□□ 0.58
LSM1-201ENST00000311351 PPFIA4O75335 1185 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 LGALS2P05162 132 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 PDIA3P30101 505 aaKnown RBP18.68■□□□□ 0.58
LSM1-201ENST00000311351 NTRK3Q16288 839 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 PKN1Q16512 942 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 RASIP1Q5U651 963 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 TRIM50Q86XT4 487 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 DHX38Q92620 1227 aaKnown RBP18.68■□□□□ 0.58
LSM1-201ENST00000311351 GPR20Q99678 358 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 MTMR10Q9NXD2 777 aa18.68■□□□□ 0.58
LSM1-201ENST00000311351 CXXC1Q9P0U4 656 aaPredicted RBP18.68■□□□□ 0.58
LSM1-201ENST00000311351 ADAMTS3O15072 1205 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 ATP9AO75110 1047 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 KCNA2P16389 499 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 EVCP57679 992 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 ZNF200P98182 395 aaPredicted RBP18.67■□□□□ 0.58
LSM1-201ENST00000311351 HIC1Q14526 733 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 OTOP2Q7RTS6 562 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 DEFB128Q7Z7B8 93 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 TM6SF1Q9BZW5 370 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 EHMT1Q9H9B1 1298 aa18.67■□□□□ 0.58
LSM1-201ENST00000311351 GRXCR1A8MXD5 290 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 PITPNM1O00562 1244 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 PRPF3O43395 683 aaKnown RBP18.66■□□□□ 0.58
LSM1-201ENST00000311351 CLK2P49760 499 aaKnown RBP18.66■□□□□ 0.58
LSM1-201ENST00000311351 MTMR1Q13613 665 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 ZNF697Q5TEC3 545 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 HERVK_113Q902F9 699 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 WNT8BQ93098 351 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 SENP7Q9BQF6 1050 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 SLC26A6Q9BXS9 759 aa18.66■□□□□ 0.58
LSM1-201ENST00000311351 COL6A3P12111 3177 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 H3BRB1 525 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 FGBP02675 491 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 IQCF3P0C7M6 154 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 AP3B2Q13367 1082 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 BFSP2Q13515 415 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 UTP14CQ5TAP6 766 aaKnown RBP18.65■□□□□ 0.58
LSM1-201ENST00000311351 JAKMIP3Q5VZ66 844 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 RETREG2Q8NC44 543 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 CYP2W1Q8TAV3 490 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 CDHR1Q96JP9 859 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 GUCD1Q96NT3 240 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 RNF26Q9BY78 433 aaPredicted RBP18.65■□□□□ 0.58
LSM1-201ENST00000311351 TTYH1Q9H313 450 aaPredicted RBP18.65■□□□□ 0.58
LSM1-201ENST00000311351 TUT1Q9H6E5 874 aaKnown RBP18.65■□□□□ 0.58
LSM1-201ENST00000311351 JADE2Q9NQC1 790 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 PDRG1Q9NUG6 133 aa18.65■□□□□ 0.58
LSM1-201ENST00000311351 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.64■□□□□ 0.57
LSM1-201ENST00000311351 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.64■□□□□ 0.57
LSM1-201ENST00000311351 ESYT2A0FGR8 921 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 FOSP01100 380 aaPredicted RBP18.64■□□□□ 0.57
LSM1-201ENST00000311351 SMIM10L2AP0DMW4 78 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 SMIM10L2BP0DMW5 78 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 IFNAR1P17181 557 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 DNAJB2P25686 324 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 SREBF1P36956 1147 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 STK3Q13188 491 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 RPUSD2Q8IZ73 545 aaKnown RBP18.64■□□□□ 0.57
LSM1-201ENST00000311351 CCDC155Q8N6L0 562 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 CAGE1Q8TC20 777 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 MXRA8Q9BRK3 442 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 CDH23Q9H251 3354 aa18.64■□□□□ 0.57
LSM1-201ENST00000311351 PTPRSQ13332 1948 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 KAT6AQ92794 2004 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 TCF7P36402 384 aaPredicted RBP18.63■□□□□ 0.57
LSM1-201ENST00000311351 PBX2P40425 430 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 AKAP17AQ02040 695 aaKnown RBP18.63■□□□□ 0.57
LSM1-201ENST00000311351 TRIM71Q2Q1W2 868 aaKnown RBP18.63■□□□□ 0.57
LSM1-201ENST00000311351 LRRC8DQ7L1W4 858 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 TEX2Q8IWB9 1127 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 GIMAP8Q8ND71 665 aaPredicted RBP18.63■□□□□ 0.57
LSM1-201ENST00000311351 RASGRP4Q8TDF6 673 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 ZMYND12Q9H0C1 365 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 GLT8D2Q9H1C3 349 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 KCNH7Q9NS40 1196 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 VPS54Q9P1Q0 977 aa18.63■□□□□ 0.57
LSM1-201ENST00000311351 C17orf102A2RUQ5 167 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 ZBBXA8MT70 800 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 PFKMP08237 780 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 ARP10275 920 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 CKBP12277 381 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 RFC2P35250 354 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 ARHGAP4P98171 946 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 RBL2Q08999 1139 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 PTK7Q13308 1070 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 AFAP1L1Q8TED9 768 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 CCDC12Q8WUD4 166 aaPredicted RBP18.62■□□□□ 0.57
LSM1-201ENST00000311351 ZNF274Q96GC6 653 aaPredicted RBP18.62■□□□□ 0.57
LSM1-201ENST00000311351 PBX4Q9BYU1 374 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 MTIF3Q9H2K0 278 aaKnown RBP18.62■□□□□ 0.57
LSM1-201ENST00000311351 C6orf50Q9HD87 102 aa18.62■□□□□ 0.57
LSM1-201ENST00000311351 ZNF215Q9UL58 517 aaPredicted RBP18.62■□□□□ 0.57
LSM1-201ENST00000311351 GSTTP1A0A1W2PQM5 241 aa18.61■□□□□ 0.57
LSM1-201ENST00000311351 SELPP16109 830 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms