RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 SH3RF3Q8TEJ3 882 aaPredicted RBP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 PDGFDQ9GZP0 370 aaPredicted RBP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 TULP2O00295 520 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 NONOQ15233 471 aaKnown RBP eCLIP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 CALCRLQ16602 461 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 CD248Q9HCU0 757 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 LIMA1Q9UHB6 759 aaKnown RBP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 LDHBP07195 334 aaKnown RBP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 OR52Z1P0C646 297 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 AMPD3Q01432 767 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 TCP10Q12799 353 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 TMEM266Q2M3C6 531 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 KRT71Q3SY84 523 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 USH1GQ495M9 461 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 CT47A1Q5JQC4 288 aaPredicted RBP16.06■□□□□ 0.16
PTPN9-201ENST00000306726 ADAM33Q9BZ11 813 aa16.06■□□□□ 0.16
PTPN9-201ENST00000306726 VPS41P49754 854 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 TRIM14Q14142 442 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 ARHGAP44Q17R89 818 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 TRAPPC11Q7Z392 1133 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 DAAM2Q86T65 1068 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 FAM114A1Q8IWE2 563 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 MSANTD4Q8NCY6 345 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 TRIM58Q8NG06 486 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 DYDC1Q8WWB3 177 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 ZIM3Q96PE6 472 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 PAIP2Q9BPZ3 127 aaKnown RBP16.05■□□□□ 0.16
PTPN9-201ENST00000306726 BICDL2A1A5D9 508 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 CTNNA1P35221 906 aaKnown RBP16.05■□□□□ 0.16
PTPN9-201ENST00000306726 GJC1P36383 396 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 UBXN2AP68543 259 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 ZBED6P86452 979 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 DALRD3Q5D0E6 543 aaKnown RBP16.05■□□□□ 0.16
PTPN9-201ENST00000306726 MUM1L1Q5H9M0 696 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 ARPP21Q9UBL0 812 aaPredicted RBP16.05■□□□□ 0.16
PTPN9-201ENST00000306726 PDXDC2PQ6P474 469 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 BAIAP2L1Q9UHR4 511 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 FAM184BQ9ULE4 1060 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 PCDHA4Q9UN74 947 aa16.05■□□□□ 0.16
PTPN9-201ENST00000306726 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.05■□□□□ 0.16
PTPN9-201ENST00000306726 GLI1P08151 1106 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 SSR1P43307 286 aaKnown RBP16.04■□□□□ 0.16
PTPN9-201ENST00000306726 CFAP221Q4G0U5 840 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 DPP8Q6V1X1 898 aaPredicted RBP16.04■□□□□ 0.16
PTPN9-201ENST00000306726 C6orf50Q9HD87 102 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF211Q13398 564 aaPredicted RBP16.04■□□□□ 0.16
PTPN9-201ENST00000306726 SEC23AQ15436 765 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 CCDC121Q6ZUS5 278 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 KCTD1Q719H9 257 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 CABS1Q96KC9 395 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 FAM84BQ96KN1 310 aaPredicted RBP16.04■□□□□ 0.16
PTPN9-201ENST00000306726 STIM2Q9P246 746 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 ARHGAP20Q9P2F6 1191 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 E9PMD0 336 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF76P36508 570 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 STAT3P40763 770 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 PPFIA1Q13136 1202 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 CTNNBL1Q8WYA6 563 aaPredicted RBP16.04■□□□□ 0.16
PTPN9-201ENST00000306726 MTMR8Q96EF0 704 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 ZBTB21Q9ULJ3 1066 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 KIAA1024Q9UPX6 916 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 ATP8A1Q9Y2Q0 1164 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 STK36Q9NRP7 1315 aa16.04■□□□□ 0.16
PTPN9-201ENST00000306726 DPEP1P16444 411 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 CCNE1P24864 410 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 TEX11Q8IYF3 940 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 REXO1Q8N1G1 1221 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 RNPC3Q96LT9 517 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 NUDT12Q9BQG2 462 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 SH2D3AQ9BRG2 576 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 RTFDC1Q9BY42 306 aaPredicted RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 PPP1R1BQ9UD71 204 aaPredicted RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 KIAA1551Q9HCM1 1747 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 PABPC4Q13310 644 aaKnown RBP eCLIP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 SLC9C1Q4G0N8 1177 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 SFMBT2Q5VUG0 894 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 GBP6Q6ZN66 633 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 U2AF1L4Q8WU68 220 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 CAPN11Q9UMQ6 739 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 NOVA2Q9UNW9 492 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 CNTNAP5Q8WYK1 1306 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 ZNF263O14978 683 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 UFL1O94874 794 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 LONP1P36776 959 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 PFKFB3Q16875 520 aaPredicted RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 MDM1Q8TC05 714 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 ELMO3Q96BJ8 720 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 CELF4Q9BZC1 486 aaKnown RBP16.03■□□□□ 0.16
PTPN9-201ENST00000306726 KCND1Q9NSA2 647 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 SALL4Q9UJQ4 1053 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 PLAAQ9Y263 795 aa16.03■□□□□ 0.16
PTPN9-201ENST00000306726 VIMP08670 466 aaKnown RBP16.02■□□□□ 0.16
PTPN9-201ENST00000306726 SCNN1DP51172 638 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 CACNB3P54284 484 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 EP400NLQ6ZTU2 488 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 IFT20Q8IY31 132 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 PSMD1Q99460 953 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 TRIM9Q9C026 710 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 SNX12Q9UMY4 172 aa16.02■□□□□ 0.16
PTPN9-201ENST00000306726 CNNM4Q6P4Q7 775 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms