RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 PCNTO95613 3336 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 A0A087X0T9 212 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 FAM228BP0C875 321 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 CYP4A11Q02928 519 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 DOK7Q18PE1 504 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 DCAF17Q5H9S7 520 aaPredicted RBP10.08□□□□□ -0.8
MSH4-201ENST00000263187 KLHDC7AQ5VTJ3 777 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 LRRC55Q6ZSA7 311 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 FAM196AQ6ZSG2 479 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 DDX42Q86XP3 938 aaKnown RBP eCLIP10.08□□□□□ -0.8
MSH4-201ENST00000263187 ADGRF4Q8IZF3 695 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 MICALL1Q8N3F8 863 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 NOX5Q96PH1 765 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 AP1M1Q9BXS5 423 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.08□□□□□ -0.83e-48■■■■■ 1155.2
MSH4-201ENST00000263187 PCDHA12Q9UN75 941 aa10.08□□□□□ -0.8
MSH4-201ENST00000263187 POTEFA5A3E0 1075 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 TMCO5BA8MYB1 307 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 HEXIM1O94992 359 aaKnown RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 LDHCP07864 332 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 POTEIP0CG38 1075 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 IRAK1P51617 712 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 TUBB4BP68371 445 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 GALNT17Q6IS24 598 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 PDXDC1Q6P996 788 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 POTEGQ6S5H5 508 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 POTEEQ6S8J3 1075 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 C16orf86Q6ZW13 317 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 ADAT2Q7Z6V5 191 aaKnown RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 PACS2Q86VP3 889 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 AENQ8WTP8 325 aaKnown RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 PURBQ96QR8 312 aaKnown RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 TSG101Q99816 390 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 TSGA10Q9BZW7 698 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 STIM2Q9P246 746 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 PCDHAC2Q9Y5I4 1007 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 BACH1O14867 736 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 RPS6KA4O75676 772 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 MYL1P05976 194 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 MCM3P25205 808 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 HPDP32754 393 aaPredicted RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 CASP5P51878 434 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 GRAPQ13588 217 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 HLTFQ14527 1009 aaKnown RBP eCLIP10.07□□□□□ -0.8
MSH4-201ENST00000263187 USH1GQ495M9 461 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 TTMPQ5BVD1 217 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 FAM26FQ5R3K3 315 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 SFMBT2Q5VUG0 894 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 IQCEQ6IPM2 695 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 GJB7Q6PEY0 223 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 GPBP1Q86WP2 473 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 OR2W6PQ8NHA6 318 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 GRAPLQ8TC17 118 aaPredicted RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 ANKS1AQ92625 1134 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 HAS1Q92839 578 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 CUEDC2Q9H467 287 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 JMJD4Q9H9V9 463 aa10.07□□□□□ -0.8
MSH4-201ENST00000263187 DDX4Q9NQI0 724 aaKnown RBP10.07□□□□□ -0.8
MSH4-201ENST00000263187 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.07□□□□□ -0.8
MSH4-201ENST00000263187 ANO9A1A5B4 782 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 TARSL2A2RTX5 802 aaKnown RBP10.06□□□□□ -0.8
MSH4-201ENST00000263187 NOL4O94818 638 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 SLC9A1P19634 815 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 AARSP49588 968 aaKnown RBP eCLIP10.06□□□□□ -0.8
MSH4-201ENST00000263187 PSMC6P62333 389 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 PABPC4Q13310 644 aaKnown RBP eCLIP10.06□□□□□ -0.8
MSH4-201ENST00000263187 HGSNATQ68CP4 663 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 CCDC84Q86UT8 332 aaPredicted RBP10.06□□□□□ -0.8
MSH4-201ENST00000263187 SEPT12Q8IYM1 358 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 ZIM3Q96PE6 472 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 CAPS2Q9BXY5 557 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 BCCIPQ9P287 314 aaKnown RBP eCLIP10.06□□□□□ -0.8
MSH4-201ENST00000263187 ZNF219Q9P2Y4 722 aaPredicted RBP10.06□□□□□ -0.8
MSH4-201ENST00000263187 POLLQ9UGP5 575 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 COL4A3BPQ9Y5P4 624 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 KCNK3O14649 394 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 TUBBP07437 444 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 RHBDL3P58872 404 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 GUCY1A3Q02108 690 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 KLHL30Q0D2K2 578 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 IKQ13123 557 aaPredicted RBP10.06□□□□□ -0.8
MSH4-201ENST00000263187 ADAM9Q13443 819 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 SLC9C1Q4G0N8 1177 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 ZNF287Q9HBT7 754 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 MTMR4Q9NYA4 1195 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 SNED1Q8TER0 1413 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 CLIC2O15247 247 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 HSF2BPO75031 334 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 PPFIA4O75335 1185 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 TRAPPC3LQ5T215 181 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 NAA35Q5VZE5 725 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 MAATS1Q7Z4T9 603 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 ZFPM1Q8IX07 1006 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 GUF1Q8N442 669 aaKnown RBP10.06□□□□□ -0.8
MSH4-201ENST00000263187 LZTS2Q9BRK4 669 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 TRIM31Q9BZY9 425 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 PSTPIP2Q9H939 334 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 VIPAS39Q9H9C1 493 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 GGA1Q9UJY5 639 aa10.06□□□□□ -0.8
MSH4-201ENST00000263187 IBSPP21815 317 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms