RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 FAM196AQ6ZSG2 479 aa14.69□□□□□ -0.06
SF3A1-201ENST00000215793 FAM160B2Q86V87 743 aa14.69□□□□□ -0.06
SF3A1-201ENST00000215793 GRAMD1CQ8IYS0 662 aa14.69□□□□□ -0.06
SF3A1-201ENST00000215793 NDST4Q9H3R1 872 aa14.69□□□□□ -0.06
SF3A1-201ENST00000215793 CNOT10Q9H9A5 744 aaKnown RBP14.69□□□□□ -0.06
SF3A1-201ENST00000215793 TRPC5Q9UL62 973 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-201ENST00000215793 HEG1Q9ULI3 1381 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 CD2BP2O95400 341 aaKnown RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 EIF4A3P38919 411 aaKnown RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 RAB44Q7Z6P3 723 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 NLRP7Q8WX94 980 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 COA7Q96BR5 231 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 SNX25Q9H3E2 840 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ZFYVE16Q7Z3T8 1539 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ERBB3P21860 1342 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 CPP00450 1065 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 PLCG1P19174 1290 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 MSH2P43246 934 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ERFEQ4G0M1 354 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 TCP11X2Q5H9J9 407 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ABI1Q8IZP0 508 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 FTOQ9C0B1 505 aaKnown RBP eCLIP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ERVK-7P63135 1459 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 GFPT2O94808 682 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 KPNA2P52292 529 aaKnown RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 STX1BP61266 288 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 CACNB1Q02641 598 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 ARHGAP27Q6ZUM4 889 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 RAPH1Q70E73 1250 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 HINFPQ9BQA5 517 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 NHEJ1Q9H9Q4 299 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 USP6P35125 1406 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 CLGNO14967 610 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 S100BP04271 92 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 SERPINB6P35237 376 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 TFAMQ00059 246 aaKnown RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 DHX9Q08211 1270 aaKnown RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 TRIM68Q6AZZ1 485 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 USP17L2Q6R6M4 530 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 PI16Q6UXB8 463 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 METTL23Q86XA0 190 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 FOXP4Q8IVH2 680 aaPredicted RBP14.68□□□□□ -0.06
SF3A1-201ENST00000215793 WHAMMQ8TF30 809 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 APOL6Q9BWW8 343 aa14.68□□□□□ -0.06
SF3A1-201ENST00000215793 GOLGA8SH3BPF8 625 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 KRT1P04264 644 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 CCND2P30279 289 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 SNCBQ16143 134 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 PAGE5Q96GU1 130 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 LRGUKQ96M69 825 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 UBE2TQ9NPD8 197 aaPredicted RBP14.67□□□□□ -0.06
SF3A1-201ENST00000215793 PCDHB6Q9Y5E3 794 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 METP08581 1390 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 PNMA6FA0A0J9YX94 578 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 GDF11O95390 407 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 ACTN1P12814 892 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 CYP4F22Q6NT55 531 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 C4orf50Q6ZRC1 276 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 PGBD1Q96JS3 809 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 SLC38A10Q9HBR0 1119 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 OSBPP22059 807 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 CDC25AP30304 524 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 GPR162Q16538 588 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 CCNYQ8ND76 341 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 ACRBPQ8NEB7 543 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 AP5M1Q9H0R1 490 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 PCIF1Q9H4Z3 704 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 SH3GLB2Q9NR46 395 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 SASH1O94885 1247 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 EIF3BP55884 814 aaKnown RBP14.67□□□□□ -0.06
SF3A1-201ENST00000215793 IFT88Q13099 833 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 DNAAF3Q8N9W5 541 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 NEK9Q8TD19 979 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 SLC12A6Q9UHW9 1150 aa14.67□□□□□ -0.06
SF3A1-201ENST00000215793 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 CTNND1O60716 968 aaKnown RBP14.66□□□□□ -0.06
SF3A1-201ENST00000215793 GOLGA8FQ08AF8 430 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 GOLGA8DPQ0D2H9 430 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 TMTC3Q6ZXV5 915 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 MEIS1O00470 390 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 FTCDO95954 541 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 USP17L8P0C7I0 530 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 STMN1P16949 149 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 RASGRF1Q13972 1273 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 BRIP1Q9BX63 1249 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 ANKARQ7Z5J8 1434 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 SESN3P58005 492 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 COG7P83436 770 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 MYO1EQ12965 1108 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 HSP90AA5PQ58FG0 334 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 ALS2CLQ60I27 953 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 SMYD2Q9NRG4 433 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 SOWAHDA6NJG2 315 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 MT-ND3P03897 115 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 PSAPP07602 524 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 RHOT2Q8IXI1 618 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 SCYL3Q8IZE3 742 aa14.66□□□□□ -0.06
SF3A1-201ENST00000215793 SKA2Q8WVK7 121 aaPredicted RBP14.66□□□□□ -0.06
SF3A1-201ENST00000215793 DDX27Q96GQ7 796 aaKnown RBP14.66□□□□□ -0.06
SF3A1-201ENST00000215793 TUBB6Q9BUF5 446 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms