RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W CUS2P53830 285 aaPredicted RBP5.88□□□□□ -1.47
CAF40YNL288W GIP3Q03016 1276 aa5.88□□□□□ -1.47
CAF40YNL288W VPS16Q03308 798 aa5.88□□□□□ -1.47
CAF40YNL288W MTQ2Q03920 221 aaPredicted RBP5.88□□□□□ -1.47
CAF40YNL288W DIN7Q12086 430 aa5.88□□□□□ -1.47
CAF40YNL288W YPL245WQ12179 454 aaKnown RBP5.88□□□□□ -1.47
CAF40YNL288W YOR114WQ12219 294 aa5.88□□□□□ -1.47
CAF40YNL288W RRP12Q12754 1228 aaKnown RBP5.88□□□□□ -1.47
CAF40YNL288W LAG2Q92325 660 aa5.88□□□□□ -1.47
CAF40YNL288W DBR1P24309 405 aaKnown RBP5.87□□□□□ -1.47
CAF40YNL288W BUB3P26449 341 aa5.87□□□□□ -1.47
CAF40YNL288W HOG1P32485 435 aa5.87□□□□□ -1.47
CAF40YNL288W MEI5P32489 222 aa5.87□□□□□ -1.47
CAF40YNL288W YBR071WP38243 211 aa5.87□□□□□ -1.47
CAF40YNL288W OCA5P38738 679 aa5.87□□□□□ -1.47
CAF40YNL288W MET18P40469 1032 aa5.87□□□□□ -1.47
CAF40YNL288W MPH1P40562 993 aa5.87□□□□□ -1.47
CAF40YNL288W SEC27P41811 889 aaKnown RBP5.87□□□□□ -1.47
CAF40YNL288W UBP6P43593 499 aaKnown RBP5.87□□□□□ -1.47
CAF40YNL288W NAS6P50086 228 aa5.87□□□□□ -1.47
CAF40YNL288W YGR053CP53234 283 aa5.87□□□□□ -1.47
CAF40YNL288W MRPL22P53881 309 aa5.87□□□□□ -1.47
CAF40YNL288W YNL010WP53981 241 aaKnown RBP5.87□□□□□ -1.47
CAF40YNL288W STP3Q05937 343 aa5.87□□□□□ -1.47
CAF40YNL288W LEU9Q12166 604 aaKnown RBP5.87□□□□□ -1.47
CAF40YNL288W YDL177CQ12257 170 aa5.87□□□□□ -1.47
CAF40YNL288W YDR061WQ12298 539 aa5.87□□□□□ -1.47
CAF40YNL288W SKM1Q12469 655 aa5.87□□□□□ -1.47
CAF40YNL288W CAR1P00812 333 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W KIN2P13186 1147 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W EXO70P19658 623 aa5.86□□□□□ -1.47
CAF40YNL288W TYR1P20049 452 aa5.86□□□□□ -1.47
CAF40YNL288W SPS22P25380 463 aa5.86□□□□□ -1.47
CAF40YNL288W ADE1P27616 306 aa5.86□□□□□ -1.47
CAF40YNL288W LYP1P32487 611 aa5.86□□□□□ -1.47
CAF40YNL288W DUT1P33317 147 aa5.86□□□□□ -1.47
CAF40YNL288W KKQ8P36004 724 aa5.86□□□□□ -1.47
CAF40YNL288W YCR087C-AP37263 153 aa5.86□□□□□ -1.47
CAF40YNL288W HEK2P38199 381 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47 RIP-Chip
CAF40YNL288W RRN10P38204 145 aa5.86□□□□□ -1.47
CAF40YNL288W YHR112CP38716 378 aa5.86□□□□□ -1.47
CAF40YNL288W ARN1P38731 627 aa5.86□□□□□ -1.47
CAF40YNL288W BEM4P39011 633 aa5.86□□□□□ -1.47
CAF40YNL288W PLB1P39105 664 aa5.86□□□□□ -1.47
CAF40YNL288W YEN1P40028 759 aa5.86□□□□□ -1.47
CAF40YNL288W CAB2P40506 365 aa5.86□□□□□ -1.47
CAF40YNL288W MNT3P40549 630 aa5.86□□□□□ -1.47
CAF40YNL288W SEC26P41810 973 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W YGL176CP46945 554 aa5.86□□□□□ -1.47
CAF40YNL288W RNR4P49723 345 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W YPT32P51996 222 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W ERG26P53199 349 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W NRM1P53718 249 aa5.86□□□□□ -1.47
CAF40YNL288W LGE1Q02796 332 aaKnown RBP5.86□□□□□ -1.47
CAF40YNL288W YMR111CQ04461 462 aaPredicted RBP5.86□□□□□ -1.47
CAF40YNL288W ROY1Q04847 553 aa5.86□□□□□ -1.47
CAF40YNL288W CDA2Q06703 312 aa5.86□□□□□ -1.47
CAF40YNL288W UAF30Q08747 228 aa5.86□□□□□ -1.47
CAF40YNL288W YOR352WQ08816 343 aa5.86□□□□□ -1.47
CAF40YNL288W YOL107WQ12239 342 aa5.86□□□□□ -1.47
CAF40YNL288W RRP36Q12481 300 aaPredicted RBP5.86□□□□□ -1.47
CAF40YNL288W YLR111WQ12528 110 aa5.86□□□□□ -1.47
CAF40YNL288W HXK2P04807 486 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W GAL7P08431 366 aa5.85□□□□□ -1.47
CAF40YNL288W RPS21AP0C0V8 87 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W BAS1P22035 811 aa5.85□□□□□ -1.47
CAF40YNL288W NPP1P25353 742 aa5.85□□□□□ -1.47
CAF40YNL288W OCA4P25366 362 aa5.85□□□□□ -1.47
CAF40YNL288W NTH1P32356 751 aa5.85□□□□□ -1.47
CAF40YNL288W TOA1P32773 286 aa5.85□□□□□ -1.47
CAF40YNL288W HES1P35843 434 aa5.85□□□□□ -1.47
CAF40YNL288W CAF4P36130 643 aa5.85□□□□□ -1.47
CAF40YNL288W FMP46P36141 133 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W UME6P39001 836 aa5.85□□□□□ -1.47
CAF40YNL288W ARB1P40024 610 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W MRX1P40050 688 aa5.85□□□□□ -1.47
CAF40YNL288W APQ12P40532 138 aa5.85□□□□□ -1.47
CAF40YNL288W MTR3P48240 250 aaPredicted RBP5.85□□□□□ -1.47
CAF40YNL288W TYW3P53177 273 aa5.85□□□□□ -1.47
CAF40YNL288W ESF2P53743 316 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W YNL140CP53910 189 aa5.85□□□□□ -1.47
CAF40YNL288W SUB1P54000 292 aaKnown RBP5.85□□□□□ -1.47
CAF40YNL288W MPS1P54199 764 aa5.85□□□□□ -1.47
CAF40YNL288W YAT1P80235 687 aa5.85□□□□□ -1.47
CAF40YNL288W FMN1Q03778 218 aa5.85□□□□□ -1.47
CAF40YNL288W ECM11Q04110 302 aa5.85□□□□□ -1.47
CAF40YNL288W MUS81Q04149 632 aaPredicted RBP5.85□□□□□ -1.47
CAF40YNL288W DIC1Q06143 298 aa5.85□□□□□ -1.47
CAF40YNL288W YLR413WQ06689 675 aa5.85□□□□□ -1.47
CAF40YNL288W YLR030WQ07967 263 aa5.85□□□□□ -1.47
CAF40YNL288W IRC13Q08630 104 aa5.85□□□□□ -1.47
CAF40YNL288W ESA1Q08649 445 aa5.85□□□□□ -1.47
CAF40YNL288W NMD4Q12129 218 aa5.85□□□□□ -1.47
CAF40YNL288W HAL9Q12180 1030 aa5.85□□□□□ -1.47
CAF40YNL288W MHT1Q12525 324 aa5.85□□□□□ -1.47
CAF40YNL288W SAS5Q99314 248 aa5.85□□□□□ -1.47
CAF40YNL288W STT4P37297 1900 aa5.85□□□□□ -1.47
CAF40YNL288W GAL4P04386 881 aa5.84□□□□□ -1.47
CAF40YNL288W TY2A-LR1P0C2J4 438 aa5.84□□□□□ -1.47
CAF40YNL288W TY2A-FP0CX61 438 aa5.84□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms