RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C GPH1P06738 902 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C SEC53P07283 254 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C APE1P14904 514 aa2.08□□□□□ -2.08
UFD4YKL010C GIT1P25346 518 aa2.08□□□□□ -2.08
UFD4YKL010C RHB1P25378 209 aa2.08□□□□□ -2.08
UFD4YKL010C RPN2P32565 945 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C SPO23P33757 523 aa2.08□□□□□ -2.08
UFD4YKL010C YBR139WP38109 508 aa2.08□□□□□ -2.08
UFD4YKL010C MTW1P39731 289 aa2.08□□□□□ -2.08
UFD4YKL010C BTT1P40314 149 aaPredicted RBP2.08□□□□□ -2.08
UFD4YKL010C RSC8P43609 557 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C YJL049WP47048 450 aa2.08□□□□□ -2.08
UFD4YKL010C FOL2P51601 243 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C YGL235WP53071 178 aa2.08□□□□□ -2.08
UFD4YKL010C YGR053CP53234 283 aa2.08□□□□□ -2.08
UFD4YKL010C HPT1Q04178 221 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C ATG38Q05789 226 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C YLR345WQ06137 509 aa2.08□□□□□ -2.08
UFD4YKL010C GRS2Q06817 618 aa2.08□□□□□ -2.08
UFD4YKL010C RTT10Q08924 1013 aa2.08□□□□□ -2.08
UFD4YKL010C CHS5Q12114 671 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C VCX1Q99385 411 aa2.08□□□□□ -2.08
UFD4YKL010C TY4B-PA0A0B7P3V8 1104 aa2.08□□□□□ -2.08
UFD4YKL010C INH1P01097 85 aa2.08□□□□□ -2.08
UFD4YKL010C SCH9P11792 824 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C PUP3P25451 205 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C YCR099CP25657 155 aa2.08□□□□□ -2.08
UFD4YKL010C COX13P32799 129 aa2.08□□□□□ -2.08
UFD4YKL010C PMT1P33775 817 aa2.08□□□□□ -2.08
UFD4YKL010C SPC42P36094 363 aa2.08□□□□□ -2.08
UFD4YKL010C IRS4P36115 615 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C YBL029WP38201 376 aa2.08□□□□□ -2.08
UFD4YKL010C IFA38P38286 347 aa2.08□□□□□ -2.08
UFD4YKL010C YFL040WP43562 540 aa2.08□□□□□ -2.08
UFD4YKL010C CNN1P43618 361 aa2.08□□□□□ -2.08
UFD4YKL010C ATG36P46983 293 aa2.08□□□□□ -2.08
UFD4YKL010C EAR1Q03212 550 aa2.08□□□□□ -2.08
UFD4YKL010C SPG3Q04398 127 aaPredicted RBP2.08□□□□□ -2.08
UFD4YKL010C YMR310CQ04867 317 aaPredicted RBP2.08□□□□□ -2.08
UFD4YKL010C MRI1Q06489 411 aaKnown RBP2.08□□□□□ -2.08
UFD4YKL010C MRPL35Q06678 367 aa2.08□□□□□ -2.08
UFD4YKL010C XYL2Q07993 356 aa2.08□□□□□ -2.08
UFD4YKL010C SMF3Q12078 473 aaPredicted RBP2.08□□□□□ -2.08
UFD4YKL010C UBX3Q12229 455 aa2.08□□□□□ -2.08
UFD4YKL010C ADF1Q2V2Q1 113 aa2.08□□□□□ -2.08
UFD4YKL010C COS2P0CX12 379 aa2.07□□□□□ -2.08
UFD4YKL010C COS3P0CX13 379 aa2.07□□□□□ -2.08
UFD4YKL010C RPB4P20433 221 aaPredicted RBP2.07□□□□□ -2.08
UFD4YKL010C IDH1P28834 360 aaKnown RBP RIP-Chip data2.07□□□□□ -2.08not detected
UFD4YKL010C MRPL9P31334 269 aa2.07□□□□□ -2.08
UFD4YKL010C ARP2P32381 391 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C PPQ1P32945 549 aa2.07□□□□□ -2.08
UFD4YKL010C PEX6P33760 1030 aa2.07□□□□□ -2.08
UFD4YKL010C TPO5P36029 618 aa2.07□□□□□ -2.08
UFD4YKL010C MRPL40P36534 297 aa2.07□□□□□ -2.08
UFD4YKL010C STP2P38704 541 aa2.07□□□□□ -2.08
UFD4YKL010C SYG1P40528 902 aa2.07□□□□□ -2.08
UFD4YKL010C CHA4P43634 648 aa2.07□□□□□ -2.08
UFD4YKL010C GLG2P47011 380 aa2.07□□□□□ -2.08
UFD4YKL010C KEL2P50090 882 aa2.07□□□□□ -2.08
UFD4YKL010C YPT32P51996 222 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C YGR016WP53209 190 aa2.07□□□□□ -2.08
UFD4YKL010C IDP3P53982 420 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C PEX13P80667 386 aa2.07□□□□□ -2.08
UFD4YKL010C LOT6Q07923 191 aa2.07□□□□□ -2.08
UFD4YKL010C NDJ1Q12366 352 aa2.07□□□□□ -2.08
UFD4YKL010C PEX11Q12462 236 aa2.07□□□□□ -2.08
UFD4YKL010C YOR131CQ12486 218 aa2.07□□□□□ -2.08
UFD4YKL010C MHF2Q3E829 80 aa2.07□□□□□ -2.08
UFD4YKL010C MDM12Q92328 271 aa2.07□□□□□ -2.08
UFD4YKL010C Q0010Q9ZZX9 128 aa2.07□□□□□ -2.08
UFD4YKL010C RPS9AO13516 197 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C CLN2P20438 545 aa2.07□□□□□ -2.08
UFD4YKL010C CHA1P25379 360 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C HIR2P32480 875 aa2.07□□□□□ -2.08
UFD4YKL010C PRP19P32523 503 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C SPS19P32573 292 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C RIB7P33312 244 aa2.07□□□□□ -2.08
UFD4YKL010C VPS21P36017 210 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C ARN2P38724 620 aa2.07□□□□□ -2.08
UFD4YKL010C QDR2P40474 542 aa2.07□□□□□ -2.08
UFD4YKL010C SEC27P41811 889 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C YJR107WP47145 328 aa2.07□□□□□ -2.08
UFD4YKL010C HMS2P47175 358 aa2.07□□□□□ -2.08
UFD4YKL010C IMD3P50095 523 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C YGR012WP53206 393 aa2.07□□□□□ -2.08
UFD4YKL010C CPR8P53728 308 aa2.07□□□□□ -2.08
UFD4YKL010C CIA1Q05583 330 aa2.07□□□□□ -2.08
UFD4YKL010C ENT2Q05785 613 aa2.07□□□□□ -2.08
UFD4YKL010C DBP9Q06218 594 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C RAD34Q06665 692 aa2.07□□□□□ -2.08
UFD4YKL010C YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.07□□□□□ -2.08not detected
UFD4YKL010C YOR389WQ08912 624 aa2.07□□□□□ -2.08
UFD4YKL010C ULA1Q12059 462 aa2.07□□□□□ -2.08
UFD4YKL010C PER33Q12144 273 aa2.07□□□□□ -2.08
UFD4YKL010C YLR046CQ12253 270 aa2.07□□□□□ -2.08
UFD4YKL010C CBS2P14905 389 aa2.07□□□□□ -2.08
UFD4YKL010C SAC7P17121 654 aa2.07□□□□□ -2.08
UFD4YKL010C YAP1P19880 650 aaKnown RBP2.07□□□□□ -2.08
UFD4YKL010C RPS1BP23248 255 aaKnown RBP2.07□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms