RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	BRR1	Q99177	341 aa	Predicted RBP	4.13	□□□□□ -1.75
HSP42	YDR171W	YOR019W	Q99248	730 aa		4.13	□□□□□ -1.75
HSP42	YDR171W	VCX1	Q99385	411 aa		4.13	□□□□□ -1.75
HSP42	YDR171W	UBR2	Q07963	1872 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	YER145C-A	A0A023PYF4	145 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	SSC1	P0CS90	654 aa	Known RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	ICL1	P28240	557 aa	Predicted RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	ZIP1	P31111	875 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	SIP2	P34164	415 aa	Known RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	PTK1	P36002	662 aa	Predicted RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	YKL023W	P36103	277 aa	Known RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	NTR2	P36118	322 aa	Predicted RBP	4.12	□□□□□ -1.75
HSP42	YDR171W	ARN1	P38731	627 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	GOS1	P38736	223 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	FCY21	P40039	528 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	YTA12	P40341	825 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	FMP32	P43557	207 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	MRM2	P53123	320 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	GPI17	Q04080	534 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	SMP3	Q04174	516 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	EMP46	Q12396	444 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	RRD2	Q12461	358 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	RRI1	Q12468	440 aa		4.12	□□□□□ -1.75
HSP42	YDR171W	GSC2	P40989	1895 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	CDC33	P07260	213 aa	Known RBP	4.11	□□□□□ -1.75
HSP42	YDR171W	RSR1	P13856	272 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	KSS1	P14681	368 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	FAR1	P21268	830 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	YCR016W	P25617	290 aa	Known RBP	4.11	□□□□□ -1.75
HSP42	YDR171W	HSP30	P25619	332 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	SRB5	P32585	307 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	RRN3	P36070	627 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	DUG2	P38149	878 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	MSR1	P38714	643 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	SMF2	P38778	549 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	VMA22	P38784	181 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	PHM8	P40025	321 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	JHD1	P40034	492 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	MKT1	P40850	830 aa	Known RBP	4.11	□□□□□ -1.75
HSP42	YDR171W	BIR1	P47134	954 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	RCF2	P53721	224 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	YNR061C	P53747	219 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	SLT2	Q00772	484 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	MMT1	Q03218	510 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	URC2	Q04411	772 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	YMR226C	Q05016	267 aa	Known RBP	4.11	□□□□□ -1.75
HSP42	YDR171W	YDR278C	Q05612	105 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	COQ9	Q05779	260 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	ECM22	Q05958	814 aa	Predicted RBP	4.11	□□□□□ -1.75
HSP42	YDR171W	SEC10	Q06245	871 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	YDL057W	Q07379	328 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	MCH4	Q08268	501 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	ADF1	Q2V2Q1	113 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	UBR1	P19812	1950 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	FLO1	P32768	1537 aa		4.11	□□□□□ -1.75
HSP42	YDR171W	MF(ALPHA)1	P01149	165 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	RPL6B	P05739	176 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	POL30	P15873	258 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	SNT1	P25357	1226 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	GFD2	P25370	566 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	MGT1	P26188	188 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	MRP20	P32387	263 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	SPR1	P32603	445 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	ETR1	P38071	380 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YBP1	P38315	674 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YBR242W	P38331	238 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	PCA1	P38360	1216 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	GAA1	P39012	614 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YHB1	P39676	399 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	AST2	P39945	430 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	SER33	P40510	469 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	MNT3	P40549	630 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	CFD1	P40558	293 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YFH7	P43591	353 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	ARC1	P46672	376 aa	Known RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	YML6	P51998	286 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YGL036W	P53185	909 aa	Predicted RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	YTP1	P53584	459 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	BIO4	P53630	237 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	SED5	Q01590	340 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	RCF1	Q03713	159 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	FIN1	Q03898	291 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	PRM6	Q04705	352 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	YDR222W	Q04925	415 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	SPC2	Q04969	178 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	CUR1	Q06469	252 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	DIB1	Q06819	143 aa	Predicted RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	DNL4	Q08387	944 aa	Predicted RBP	4.1	□□□□□ -1.75
HSP42	YDR171W	YLR049C	Q12110	428 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	HER1	Q12276	1246 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	BBP1	Q12365	385 aa		4.1	□□□□□ -1.75
HSP42	YDR171W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
HSP42	YDR171W	RPS3	P05750	240 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	COR1	P07256	457 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	MRP2	P10663	115 aa	Predicted RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	SNF3	P10870	884 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	HSC82	P15108	705 aa	Known RBP	4.09	□□□□□ -1.75
HSP42	YDR171W	VPS3	P23643	1011 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	CLB3	P24870	427 aa		4.09	□□□□□ -1.75
HSP42	YDR171W	RME1	P32338	300 aa	Known RBP	4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms