RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PPM1EQ8WY54 764 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 CAVIN3Q969G5 261 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 SALL4Q9UJQ4 1053 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 COL4A3BPQ9Y5P4 624 aa22.24■■□□□ 1.15
SYNGAP1-227ENST00000638142 GNPATO15228 680 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 EDIL3O43854 480 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 CXCR5P32302 372 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 GFPT1Q06210 699 aaPredicted RBP22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 SF3B2Q13435 895 aaKnown RBP22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 SLC9C1Q4G0N8 1177 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 ZCWPW2Q504Y3 356 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 ASPRV1Q53RT3 343 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 ALS2CLQ60I27 953 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 MTMR8Q96EF0 704 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 TANGO6Q9C0B7 1094 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 LUC7LQ9NQ29 371 aaKnown RBP22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 MATR3P43243 847 aaKnown RBP eCLIP22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 RASSF7Q02833 373 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 KCNMA1Q12791 1236 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 NFIXQ14938 502 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 DNAJC21Q5F1R6 531 aaKnown RBP22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 KLHDC7AQ5VTJ3 777 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 C8orf74Q6P047 294 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 PLIN4Q96Q06 1357 aa22.23■■□□□ 1.15
SYNGAP1-227ENST00000638142 EPB41P11171 864 aaKnown RBP22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 SLC1A4P43007 532 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 NNTQ13423 1086 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 TTC31Q49AM3 519 aaPredicted RBP22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 CFAP221Q4G0U5 840 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 TDRD12Q587J7 1177 aaKnown RBP22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 PPP4R3AQ6IN85 833 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 PPP1R18Q6NYC8 613 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 KCNK18Q7Z418 384 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 PSMB7Q99436 277 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 NUDT12Q9BQG2 462 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 NCK2O43639 380 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 SERPING1P05155 500 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 SLC7A5Q01650 507 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 FBXO41Q8TF61 875 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 COA7Q96BR5 231 aa22.22■■□□□ 1.15
SYNGAP1-227ENST00000638142 ATP2B2Q01814 1243 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 COASYQ13057 564 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 LRRC41Q15345 812 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 SFMBT2Q5VUG0 894 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 ANKRD13CQ8N6S4 541 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 DNAJC19Q96DA6 116 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 FAM163AQ96GL9 167 aaPredicted RBP22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 CEP63Q96MT8 703 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 HINFPQ9BQA5 517 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 RTCBQ9Y3I0 505 aaKnown RBP22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 NHSQ6T4R5 1651 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 RHBDL3P58872 404 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 CCDC40Q4G0X9 1142 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 SLF2Q8IX21 1173 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 EFCAB13Q8IY85 973 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 GLIS3Q8NEA6 775 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 CD209Q9NNX6 404 aa22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 RBM12Q9NTZ6 932 aaKnown RBP22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 FRMPD2Q68DX3 1309 aaPredicted RBP22.21■■□□□ 1.15
SYNGAP1-227ENST00000638142 GNA14O95837 355 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 IRAK1P51617 712 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 SLC51AQ86UW1 340 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 RUFY1Q96T51 708 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 SMARCAL1Q9NZC9 954 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 EHD2Q9NZN4 543 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 TRAF5O00463 557 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 HSF2BPO75031 334 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 CLSTN1O94985 981 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 FAM26FQ5R3K3 315 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 FAM83BQ5T0W9 1011 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 PACS2Q86VP3 889 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 CAPS2Q9BXY5 557 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 FAM107BQ9H098 131 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 MTMR4Q9NYA4 1195 aa22.2■■□□□ 1.14
SYNGAP1-227ENST00000638142 BUB1O43683 1085 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 NOL4O94818 638 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 CPP00450 1065 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 SNHG28P0DPA3 235 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 TNNI2P48788 182 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 NAP1L1P55209 391 aaKnown RBP22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 IFT20Q8IY31 132 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 GPR101Q96P66 508 aaPredicted RBP22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 PLEKHA4Q9H4M7 779 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 NLRC4Q9NPP4 1024 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 BMP2KQ9NSY1 1161 aaPredicted RBP22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 PANK4Q9NVE7 773 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 ATP6V0A2Q9Y487 856 aa22.19■■□□□ 1.14
SYNGAP1-227ENST00000638142 GAKO14976 1311 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 KDM3AQ9Y4C1 1321 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 A6NNZ2 444 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 TLR2O60603 784 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 IL1R1P14778 569 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 ERCC3P19447 782 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 MARSP56192 900 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 TUBB8Q3ZCM7 444 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 HYIQ5T013 277 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 GPIHBP1Q8IV16 184 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 TSEN2Q8NCE0 465 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 ARHGEF1Q92888 912 aaKnown RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms