RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 AIFM3Q96NN9 605 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 ANO3Q9BYT9 981 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 EHMT1Q9H9B1 1298 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 STARD7Q9NQZ5 370 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 SH3GLB2Q9NR46 395 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 NR2E3Q9Y5X4 410 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 ALPK3Q96L96 1907 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 MYL3P08590 195 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 TGFB3P10600 412 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 CPT1AP50416 773 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 RTP1P59025 263 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 NLRP5P59047 1200 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 NUCB2P80303 420 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 ARHGAP1Q07960 439 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 AP3B2Q13367 1082 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 SNX17Q15036 470 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 GNPTABQ3T906 1256 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 TRIM60Q495X7 471 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 DHX37Q8IY37 1157 aaKnown RBP11.26□□□□□ -0.61
CLN3-261ENST00000637686 CCDC148Q8NFR7 591 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 RASGRP4Q8TDF6 673 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 AFG1LQ8WV93 481 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 GLT1D1Q96MS3 346 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 INPP4AQ96PE3 977 aaPredicted RBP11.26□□□□□ -0.61
CLN3-261ENST00000637686 ORC3Q9UBD5 711 aaPredicted RBP11.26□□□□□ -0.61
CLN3-261ENST00000637686 ATP11BQ9Y2G3 1177 aa11.26□□□□□ -0.61
CLN3-261ENST00000637686 DNAH12Q6ZR08 3092 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 PDE4DIPQ5VU43 2346 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 SPATA31C2B4DYI2 1134 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 H0YGN5 161 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 FIBPO43427 364 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 JAK2O60674 1132 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 GGPS1O95749 300 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 MMP3P08254 477 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 ITGB5P18084 799 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 UBA1P22314 1058 aaKnown RBP11.25□□□□□ -0.61
CLN3-261ENST00000637686 ICAM3P32942 547 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 SEMA3FQ13275 785 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 LAMC2Q13753 1193 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 BRDTQ58F21 947 aaPredicted RBP11.25□□□□□ -0.61
CLN3-261ENST00000637686 CELF3Q5SZQ8 465 aaKnown RBP11.25□□□□□ -0.61
CLN3-261ENST00000637686 NLRX1Q86UT6 975 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 REXO1Q8N1G1 1221 aaKnown RBP11.25□□□□□ -0.61
CLN3-261ENST00000637686 BICD2Q8TD16 824 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 WASF1Q92558 559 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 BCAS3Q9H6U6 928 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 JADE2Q9NQC1 790 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 CHMP5Q9NZZ3 219 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 ZMYND8Q9ULU4 1186 aaPredicted RBP11.25□□□□□ -0.61
CLN3-261ENST00000637686 UBIAD1Q9Y5Z9 338 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 ELP1O95163 1332 aa11.25□□□□□ -0.61
CLN3-261ENST00000637686 A0A0U1RQG5 324 aaPredicted RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 A6NJR5 290 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 ARVCFO00192 962 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PQBP1O60828 265 aaKnown RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 CABYRO75952 493 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 FDPSP14324 419 aaKnown RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 SREBF1P36956 1147 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PSMC6P62333 389 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PURAQ00577 322 aaKnown RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 MTMR1Q13613 665 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PRPF38BQ5VTL8 546 aaKnown RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 C1orf53Q5VUE5 145 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 MYSM1Q5VVJ2 828 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 CYP2W1Q8TAV3 490 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 EMID1Q96A84 441 aaPredicted RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 GPRASP2Q96D09 838 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 SPATA33Q96N06 139 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 MXRA8Q9BRK3 442 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 MTG1Q9BT17 334 aaPredicted RBP11.24□□□□□ -0.61
CLN3-261ENST00000637686 ALG1Q9BT22 464 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 MLXIPQ9HAP2 919 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 GJB4Q9NTQ9 266 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 POLR3EQ9NVU0 708 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PCDH10Q9P2E7 1040 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 PCDHA4Q9UN74 947 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 KCNJ14Q9UNX9 436 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 MYH7BA7E2Y1 1941 aa11.24□□□□□ -0.61
CLN3-261ENST00000637686 KPNA6O60684 536 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 ATP9AO75110 1047 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 SYN1P17600 705 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 GJB2P29033 226 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 ZNF76P36508 570 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 CDK7P50613 346 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 ARHGAP4P98171 946 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 TLE2Q04725 743 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 ITGA7Q13683 1181 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 NEDD9Q14511 834 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 NPY5RQ15761 445 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 DGKDQ16760 1214 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 HSDL1Q3SXM5 330 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 MCTP2Q6DN12 878 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 GALNT17Q6IS24 598 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 CYFIP1Q7L576 1253 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 BLIDQ8IZY5 108 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 FAM184AQ8NB25 1140 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 PPTC7Q8NI37 304 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 PHF20Q9BVI0 1012 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 PKD2L1Q9P0L9 805 aa11.23□□□□□ -0.61
CLN3-261ENST00000637686 GRIN2DO15399 1336 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms