RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SRBD1Q8N5C6 995 aaKnown RBP14.52□□□□□ -0.09
PNKP-217ENST00000625216 AFG1LQ8WV93 481 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 CUL5Q93034 780 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 RNPC3Q96LT9 517 aaKnown RBP14.52□□□□□ -0.09
PNKP-217ENST00000625216 PPP1R12CQ9BZL4 782 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 TRPV6Q9H1D0 765 aa14.52□□□□□ -0.09
PNKP-217ENST00000625216 NAP1L2Q9ULW6 460 aaPredicted RBP14.52□□□□□ -0.09
PNKP-217ENST00000625216 PIK3CDO00329 1044 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 MMP3P08254 477 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 CCT2P78371 535 aaKnown RBP14.51□□□□□ -0.09
PNKP-217ENST00000625216 DGKDQ16760 1214 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 XRRA1Q6P2D8 792 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 DHX37Q8IY37 1157 aaKnown RBP14.51□□□□□ -0.09
PNKP-217ENST00000625216 PIBF1Q8WXW3 757 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 NOC4LQ9BVI4 516 aaKnown RBP14.51□□□□□ -0.09
PNKP-217ENST00000625216 NCOA5Q9HCD5 579 aaKnown RBP14.51□□□□□ -0.09
PNKP-217ENST00000625216 RBM28Q9NW13 759 aaKnown RBP14.51□□□□□ -0.09
PNKP-217ENST00000625216 MTMR10Q9NXD2 777 aa14.51□□□□□ -0.09
PNKP-217ENST00000625216 LTBP2Q14767 1821 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.5□□□□□ -0.09
PNKP-217ENST00000625216 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.5□□□□□ -0.09
PNKP-217ENST00000625216 PPFIA4O75335 1185 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 RGS20O76081 388 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 PLEKHA8P1O95397 391 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 CTDNEP1O95476 244 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 CSF2RAP15509 400 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 RXRAP19793 462 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 CYP2C18P33260 490 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 RCAN1P53805 252 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 GNPTABQ3T906 1256 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 TMEM240Q5SV17 173 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 PSRC1Q6PGN9 363 aaPredicted RBP14.5□□□□□ -0.09
PNKP-217ENST00000625216 TMTC3Q6ZXV5 915 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 MICU3Q86XE3 530 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 TEX2Q8IWB9 1127 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 RPUSD2Q8IZ73 545 aaKnown RBP14.5□□□□□ -0.09
PNKP-217ENST00000625216 PPTC7Q8NI37 304 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 SMARCC2Q8TAQ2 1214 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.5□□□□□ -0.093e-9■■■□□ 18.5
PNKP-217ENST00000625216 IL23AQ9NPF7 189 aa14.5□□□□□ -0.09
PNKP-217ENST00000625216 MYH15Q9Y2K3 1946 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 FRMPD4Q14CM0 1322 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 GOLGA8AA7E2F4 631 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 ZBTB43O43298 467 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 JAK2O60674 1132 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 FAM47CQ5HY64 1035 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 CELF3Q5SZQ8 465 aaKnown RBP14.49□□□□□ -0.09
PNKP-217ENST00000625216 MYSM1Q5VVJ2 828 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 C16orf59Q7L2K0 433 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 SESTD1Q86VW0 696 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 NSUN7Q8NE18 718 aaKnown RBP14.49□□□□□ -0.09
PNKP-217ENST00000625216 KATNAL1Q9BW62 490 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 MTIF3Q9H2K0 278 aaKnown RBP14.49□□□□□ -0.09
PNKP-217ENST00000625216 PSTPIP2Q9H939 334 aa14.49□□□□□ -0.09
PNKP-217ENST00000625216 TRMT13Q9NUP7 481 aaKnown RBP14.49□□□□□ -0.09
PNKP-217ENST00000625216 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.49□□□□□ -0.09
PNKP-217ENST00000625216 TMEM265A0A087WTH1 108 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 MEIS2O14770 477 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 FGBP02675 491 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 HOXD8P13378 290 aaPredicted RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 GJB2P29033 226 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 CDC27P30260 824 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 ICAM3P32942 547 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 METAP2P50579 478 aaKnown RBP eCLIP14.48□□□□□ -0.09
PNKP-217ENST00000625216 ZNF697Q5TEC3 545 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 RASIP1Q5U651 963 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 ZNF365Q70YC5 407 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 Q7L0L9 218 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 CMTR1Q8N1G2 835 aaKnown RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 IL31RAQ8NI17 732 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 INPP4AQ96PE3 977 aaPredicted RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 FAM217BQ9NTX9 383 aaPredicted RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 CHMP5Q9NZZ3 219 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 CIZ1Q9ULV3 898 aaPredicted RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 SMC3Q9UQE7 1217 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 STXBP5LQ9Y2K9 1186 aa14.48□□□□□ -0.09
PNKP-217ENST00000625216 LAMA2P24043 3122 aaKnown RBP14.48□□□□□ -0.09
PNKP-217ENST00000625216 SPATA31C2B4DYI2 1134 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 PITPNM1O00562 1244 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 GGPS1O95749 300 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 PFKMP08237 780 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 CYP2C9P11712 490 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 CCL23P55773 120 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 MRPS9P82933 396 aaKnown RBP14.47□□□□□ -0.09
PNKP-217ENST00000625216 BFSP2Q13515 415 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 PKP1Q13835 747 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 NEDD9Q14511 834 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 RTN1Q16799 776 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 PCNX4Q63HM2 1172 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 USP17L6PQ6QN14 398 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 CCDC82Q8N4S0 544 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 RETREG2Q8NC44 543 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 HERVK_113Q902F9 699 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 KAT2BQ92831 832 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 SPATA33Q96N06 139 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 MLXIPQ9HAP2 919 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 NOD1Q9Y239 953 aa14.47□□□□□ -0.09
PNKP-217ENST00000625216 UMODL1Q5DID0 1318 aa14.46□□□□□ -0.09
PNKP-217ENST00000625216 CCDC196A0A1B0GTZ2 297 aa14.46□□□□□ -0.09
PNKP-217ENST00000625216 hCG_1984214I3L0E3 225 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms