RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 TMEM132BQ14DG7 1078 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 SCYL3Q8IZE3 742 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 TRIM9Q9C026 710 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 PCIF1Q9H4Z3 704 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 FAM207AQ9NSI2 230 aaPredicted RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 B4DLN1 442 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 IPO5O00410 1097 aaKnown RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 Q3C1V9 767 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 CYFIP1Q7L576 1253 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 CCAR2Q8N163 923 aaKnown RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 BLOC1S4Q9NUP1 217 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 PCDHB13Q9Y5F0 798 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 DOCK2Q92608 1830 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 SMTNL1A8MU46 457 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 GOLGA6L6A8MZA4 724 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 PLA2G4BP0C869 781 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 CASP5P51878 434 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 E2F4Q16254 413 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 SUPT20HL1Q3ZLR7 823 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 ANKRD40Q6AI12 368 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 ANKRD13CQ8N6S4 541 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 ZNF579Q8NAF0 562 aaKnown RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 MRIQ9BWK5 157 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 IRX2Q9BZI1 471 aaPredicted RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 KCNH7Q9NS40 1196 aa11.76□□□□□ -0.53
VPS11-208ENST00000621676 WRAP73Q9P2S5 460 aaPredicted RBP11.76□□□□□ -0.53
VPS11-208ENST00000621676 VWA5AO00534 786 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 SFPQP23246 707 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS11-208ENST00000621676 NMT1P30419 496 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 NAA30Q147X3 362 aaPredicted RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 NOLC1Q14978 699 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS11-208ENST00000621676 CDR2LQ86X02 465 aaPredicted RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 OPTNQ96CV9 577 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 SLC10A4Q96EP9 437 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 CDCA5Q96FF9 252 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 PDLIM2Q96JY6 352 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 HSD3B7Q9H2F3 369 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 NLRC4Q9NPP4 1024 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 GCNT3O95395 438 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 TRAPPC10P48553 1259 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 ZNF280AP59817 542 aaPredicted RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 HTRA3P83110 453 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 PAK1Q13153 545 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 DCAF17Q5H9S7 520 aaPredicted RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 TRIM50Q86XT4 487 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 MYCT1Q8N699 235 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 GMCL1Q96IK5 515 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 RAB34Q9BZG1 259 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 EFCC1Q9HA90 598 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 LZTFL1Q9NQ48 299 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 TUBE1Q9UJT0 475 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 MRPL11Q9Y3B7 192 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 PPP1R3GB7ZBB8 358 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 CELF2O95319 508 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 IGBP1P78318 339 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 IRX5P78411 483 aaPredicted RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 MORC3Q14149 939 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 RBM43Q6ZSC3 357 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 EIF2AK1Q9BQI3 630 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 RUSC1Q9BVN2 902 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 SH2D4AQ9H788 454 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 ADARB2Q9NS39 739 aaKnown RBP11.75□□□□□ -0.53
VPS11-208ENST00000621676 PANK4Q9NVE7 773 aa11.75□□□□□ -0.53
VPS11-208ENST00000621676 MYH6P13533 1939 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 BMP15O95972 392 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 CEP55Q53EZ4 464 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 TXNRD2Q9NNW7 524 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 RNF19AQ9NV58 838 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 ZNF536O15090 1300 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 RNF225M0QZC1 329 aaPredicted RBP11.74□□□□□ -0.53
VPS11-208ENST00000621676 NF2P35240 595 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 MAP3K9P80192 1104 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 MTMR1Q13613 665 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 COG2Q14746 738 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 GMCL1P1Q8NEA9 526 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 MTMR9Q96QG7 549 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 MRPL44Q9H9J2 332 aaKnown RBP11.74□□□□□ -0.53
VPS11-208ENST00000621676 INTS13Q9NVM9 706 aa11.74□□□□□ -0.53
VPS11-208ENST00000621676 TNS1Q9HBL0 1735 aaKnown RBP11.74□□□□□ -0.53
VPS11-208ENST00000621676 GOLGA8IPA6NC78 632 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 GOLGA8JA6NMD2 632 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 CCDC169A6NNP5 214 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 GTPBP6O43824 516 aaPredicted RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 CYP2J2P51589 502 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 FKBP1AP62942 108 aaKnown RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 UVSSAQ2YD98 709 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 ARMCX5Q6P1M9 558 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 SYTL5Q8TDW5 730 aaPredicted RBP11.73□□□□□ -0.53
VPS11-208ENST00000621676 COPS5Q92905 334 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 SUGCTQ9HAC7 445 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 FEM1BQ9UK73 627 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 DNM3Q9UQ16 869 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 UNC80Q8N2C7 3258 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 CASP14P31944 242 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 MIER3Q7Z3K6 550 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 SFR1Q86XK3 245 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 IGSF22Q8N9C0 903 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 UNC45AQ9H3U1 944 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 BTBD7Q9P203 1132 aa11.73□□□□□ -0.53
VPS11-208ENST00000621676 PPP1R9AQ9ULJ8 1098 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms