RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CCDC144BQ3MJ40 725 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 CYP2W1Q8TAV3 490 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 SCFD2Q8WU76 684 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 SPOCK2Q92563 424 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 LENG9Q96B70 501 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 WNT7AO00755 349 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 ADCY6O43306 1168 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 FIBPO43427 364 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 TDP2O95551 362 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 AKR1A1P14550 325 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 ZNF76P36508 570 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 ADCYAP1R1P41586 468 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 TRAPPC10P48553 1259 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 MTFR1Q15390 333 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 LETM2Q2VYF4 491 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 GNPTABQ3T906 1256 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 PPP4R3AQ6IN85 833 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 CCDC62Q6P9F0 684 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 SEPT14Q6ZU15 432 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 BRAPQ7Z569 592 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 NLRX1Q86UT6 975 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 WDR11Q9BZH6 1224 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.41■■□□□ 1.18
UPF3A-211ENST00000618700 UNC93B1Q9H1C4 597 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 HMX1Q9NP08 348 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-211ENST00000618700 FAM184BQ9ULE4 1060 aa22.41■■□□□ 1.18
UPF3A-211ENST00000618700 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-211ENST00000618700 SPATA31C2B4DYI2 1134 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 ARIH2O95376 493 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 GCFC2P16383 781 aaKnown RBP22.4■■□□□ 1.18
UPF3A-211ENST00000618700 SETQ01105 290 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-211ENST00000618700 MTMR1Q13613 665 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 IQSEC1Q6DN90 963 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 KCNV1Q6PIU1 500 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 FERMT3Q86UX7 667 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 NAP1L4Q99733 375 aaKnown RBP22.4■■□□□ 1.18
UPF3A-211ENST00000618700 PAK6Q9NQU5 681 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-211ENST00000618700 MRVI1Q9Y6F6 885 aa22.4■■□□□ 1.18
UPF3A-211ENST00000618700 ZSCAN22P10073 491 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-211ENST00000618700 TGFB3P10600 412 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 CCL5P13501 91 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 TTLL4Q14679 1199 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 Q4G0T1 1027 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 TMEM63BQ5T3F8 832 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 CDHR1Q96JP9 859 aa22.39■■□□□ 1.17
UPF3A-211ENST00000618700 DAXXQ9UER7 740 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-211ENST00000618700 DDX20Q9UHI6 824 aaKnown RBP22.39■■□□□ 1.17
UPF3A-211ENST00000618700 FRMPD3Q5JV73 1810 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 MAFGO15525 162 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 SLC37A4O43826 429 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 CCNT1O60563 726 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 BRD1O95696 1058 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 ARP10275 920 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 SMPD1P17405 629 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 UBA1P22314 1058 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 TOB1P50616 345 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 TNFAIP2Q03169 654 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 DUSP28Q4G0W2 176 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 PRR16Q569H4 304 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 MYSM1Q5VVJ2 828 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 PLA2G4DQ86XP0 818 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 LENG1Q96BZ8 264 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 ZSCAN16Q9H4T2 348 aaPredicted RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 KCNH7Q9NS40 1196 aa22.38■■□□□ 1.17
UPF3A-211ENST00000618700 DDX25Q9UHL0 483 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 DDX41Q9UJV9 622 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 NOL7Q9UMY1 257 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 GNEQ9Y223 722 aaKnown RBP22.38■■□□□ 1.17
UPF3A-211ENST00000618700 NKRFO15226 690 aaKnown RBP eCLIP22.37■■□□□ 1.17
UPF3A-211ENST00000618700 MSCO60682 206 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 TXNP10599 105 aaKnown RBP22.37■■□□□ 1.17
UPF3A-211ENST00000618700 KCNA2P16389 499 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 CNGA1P29973 690 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 SP2Q02086 613 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 RILPL1Q5EBL4 403 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 ZDHHC9Q9Y397 364 aa22.37■■□□□ 1.17
UPF3A-211ENST00000618700 DUSP11O75319 330 aaKnown RBP22.36■■□□□ 1.17
UPF3A-211ENST00000618700 F13A1P00488 732 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 ORC2Q13416 577 aaPredicted RBP22.36■■□□□ 1.17
UPF3A-211ENST00000618700 LY6KQ17RY6 165 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 TTC38Q5R3I4 469 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 GJC2Q5T442 439 aaPredicted RBP22.36■■□□□ 1.17
UPF3A-211ENST00000618700 LHX8Q68G74 356 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 IPO9Q96P70 1041 aaKnown RBP22.36■■□□□ 1.17
UPF3A-211ENST00000618700 SENP7Q9BQF6 1050 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 RNF208Q9H0X6 261 aa22.36■■□□□ 1.17
UPF3A-211ENST00000618700 AGO4Q9HCK5 861 aaKnown RBP22.36■■□□□ 1.17
UPF3A-211ENST00000618700 BRCA2P51587 3418 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 ATP9AO75110 1047 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 MYCP01106 439 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-211ENST00000618700 RARBP10826 455 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 PTGS1P23219 599 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 ITGB3BPQ13352 177 aaPredicted RBP22.35■■□□□ 1.17
UPF3A-211ENST00000618700 NBR1Q14596 966 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 ETNPPLQ8TBG4 499 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 KCNMB3Q9NPA1 279 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 Q9Y3F1 56 aa22.35■■□□□ 1.17
UPF3A-211ENST00000618700 POTEFA5A3E0 1075 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 MSH4O15457 936 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 ATP2B1P20020 1258 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms