RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	MTMR9	Q96QG7	549 aa		13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	SMCHD1	A6NHR9	2005 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	TESPA1	A2RU30	521 aa	Predicted RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	MANSC4	A6NHS7	340 aa	Predicted RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	TMEM88B	A6NKF7	163 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	MARCH6	O60337	910 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	CNMD	O75829	334 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	CYP2C8	P10632	490 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	SFPQ	P23246	707 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	FSTL1	Q12841	308 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	BAAT	Q14032	418 aa	Predicted RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	IL17A	Q16552	155 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341		Q4G0T1	1027 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	SPECC1	Q5M775	1068 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	SLC30A10	Q6XR72	485 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	CCAR2	Q8N163	923 aa	Known RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	CCDC102A	Q96A19	550 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	C16orf45	Q96MC5	204 aa	Predicted RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	XPO4	Q9C0E2	1151 aa	Known RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	COL20A1	Q9P218	1284 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	ABT1	Q9ULW3	272 aa	Known RBP	13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	RPTOR	Q8N122	1335 aa		13.13	□□□□□ -0.31
VRK3-223	ENST00000601341	TXK	P42681	527 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	GCLC	P48506	637 aa	Predicted RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	SARS	P49591	514 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	INHBE	P58166	350 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	RBM10	P98175	930 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	FANCC	Q00597	558 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PTPN14	Q15678	1187 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	TMEM266	Q2M3C6	531 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PRR16	Q569H4	304 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	CEP135	Q66GS9	1140 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	FILIP1	Q7Z7B0	1213 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	NCAPG2	Q86XI2	1143 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	SPATA20	Q8TB22	786 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	AK8	Q96MA6	479 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	TAAR1	Q96RJ0	339 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	RMDN3	Q96TC7	470 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PYM1	Q9BRP8	204 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	RAB34	Q9BZG1	259 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	TXNRD2	Q9NNW7	524 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	A1CF	Q9NQ94	594 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	CYP39A1	Q9NYL5	469 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	IFNK	Q9P0W0	207 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PFAS	O15067	1338 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	FAM86B1	E9PN63	330 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	TBX3	O15119	743 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PEX10	O60683	326 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	SLC10A3	P09131	477 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	FAM86B2	P0C5J1	330 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	UBXN2A	P68543	259 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	LONRF3	Q496Y0	759 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	SLFN12	Q8IYM2	578 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	ANKRD35	Q8N283	1001 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	SYMPK	Q92797	1274 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	ERCC4	Q92889	916 aa	Predicted RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	EPSTI1	Q96J88	318 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	HHIPL1	Q96JK4	782 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PARK7	Q99497	189 aa	Known RBP	13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	PTPN18	Q99952	460 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	HSD3B7	Q9H2F3	369 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	KCNMB3	Q9NPA1	279 aa		13.12	□□□□□ -0.31
VRK3-223	ENST00000601341	FRMPD4	Q14CM0	1322 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	SMC2	O95347	1197 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	ERCC3	P19447	782 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	YY1	P25490	414 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	TXLNA	P40222	546 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	FXR2	P51116	673 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	ERVK-9	P63128	1117 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	ERVK-24	P63145	666 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	CCNA1	P78396	465 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	PDIA5	Q14554	519 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	POSTN	Q15063	836 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341		Q3C1V9	767 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	CEP55	Q53EZ4	464 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	ARHGEF16	Q5VV41	709 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	PCNX4	Q63HM2	1172 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	XRRA1	Q6P2D8	792 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	USP49	Q70CQ1	688 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	SHCBP1	Q8NEM2	672 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	GPRC5A	Q8NFJ5	357 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	NSUN6	Q8TEA1	469 aa	Known RBP	13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	HAS1	Q92839	578 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	FAM20A	Q96MK3	541 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	CCDC94	Q9BW85	323 aa	Predicted RBP	13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	MROH8	Q9H579	483 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	ZCCHC17	Q9NP64	241 aa	Known RBP	13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	PXMP2	Q9NR77	195 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	PCDHA5	Q9Y5H7	936 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341		A0A0G2JMZ2	1700 aa		13.11	□□□□□ -0.31
VRK3-223	ENST00000601341	COL11A1	P12107	1806 aa	Predicted RBP	13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	BIN1	O00499	593 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	EIF2AK2	P19525	551 aa	Known RBP	13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	ERCC5	P28715	1186 aa	Predicted RBP	13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	UBA7	P41226	1012 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	TEC	P42680	631 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	PNOC	Q13519	176 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	ZNF710	Q8N1W2	664 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms