RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 MFSD10Q14728 455 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 HSDL1Q3SXM5 330 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 CELF3Q5SZQ8 465 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 DHX38Q92620 1227 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 RRP36Q96EU6 259 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 ALG1Q9BT22 464 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 KATNAL1Q9BW62 490 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 NKX2-4Q9H2Z4 354 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 HDAC6Q9UBN7 1215 aa17.37■□□□□ 0.37
SHKBP1-226ENST00000600791 SPTBN5Q9NRC6 3674 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 HAS3O00219 553 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 TGFB3P10600 412 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 SMARCA1P28370 1054 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 LIFRP42702 1097 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 RABGGTBP53611 331 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 MRPS9P82933 396 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 KIAA0753Q2KHM9 967 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 TMTC2Q8N394 836 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 SRBD1Q8N5C6 995 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 CCDC155Q8N6L0 562 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 C7orf31Q8N865 590 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 CAGE1Q8TC20 777 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 AFAP1L1Q8TED9 768 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 SPATA33Q96N06 139 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 LZTS2Q9BRK4 669 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 PRDM12Q9H4Q4 367 aa17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 SEC63Q9UGP8 760 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-226ENST00000600791 PPFIA4O75335 1185 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 ACTN1P12814 892 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 ATP2A2P16615 1042 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 GNAQP50148 359 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 GNPTABQ3T906 1256 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 RAB11FIP4Q86YS3 637 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 CMTR1Q8N1G2 835 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 INPP4AQ96PE3 977 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 LRRC2Q9BYS8 371 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 SLC28A3Q9HAS3 691 aa17.35■□□□□ 0.37
SHKBP1-226ENST00000600791 PIK3CDO00329 1044 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 MEIS2O14770 477 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 STAM2O75886 525 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 CALM1P0DP23 149 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 CALM2P0DP24 149 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 CALM3P0DP25 149 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 MYOGP15173 224 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 RBL2Q08999 1139 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 USP17L6PQ6QN14 398 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 LRRC8DQ7L1W4 858 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 USP38Q8NB14 1042 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 SMARCC2Q8TAQ2 1214 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 GAS2L1Q99501 681 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 FTOQ9C0B1 505 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 BCAS3Q9H6U6 928 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 DOCK5Q9H7D0 1870 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 MLXIPQ9HAP2 919 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 PCDHA11Q9Y5I1 949 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 SLC12A7Q9Y666 1083 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 TRANK1O15050 2925 aa17.34■□□□□ 0.37
SHKBP1-226ENST00000600791 SELPP16109 830 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 ICAM3P32942 547 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 SEMA3FQ13275 785 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 GPNMBQ14956 572 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 PPP2R2DQ66LE6 453 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 SGMS1Q86VZ5 419 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 CUL5Q93034 780 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 SLC9A7Q96T83 725 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 C16orf70Q9BSU1 422 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 COL25A1Q9BXS0 654 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 RTEL1Q9NZ71 1219 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 TTC28Q96AY4 2481 aa17.33■□□□□ 0.36
SHKBP1-226ENST00000600791 PTPRSQ13332 1948 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 FIBPO43427 364 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 CKBP12277 381 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 PTK7Q13308 1070 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 ADGRE1Q14246 886 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 HIC1Q14526 733 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 RNF20Q5VTR2 975 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 PCNX4Q63HM2 1172 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 METTL7BQ6UX53 244 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 TMTC3Q6ZXV5 915 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 MICU3Q86XE3 530 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 WNT8BQ93098 351 aa17.32■□□□□ 0.36
SHKBP1-226ENST00000600791 hCG_1642624A0A1W2PR95 340 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 SPATA31C2B4DYI2 1134 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 NOP56O00567 594 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 BAIAP3O94812 1187 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 LGALS2P05162 132 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 ZNF200P98182 395 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 TRIM71Q2Q1W2 868 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 CCDC82Q8N4S0 544 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 FANCBQ8NB91 859 aa17.31■□□□□ 0.36
SHKBP1-226ENST00000600791 H3BRB1 525 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 NBNO60934 754 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 CDC45O75419 566 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 CXCL10P02778 98 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 CA3P07451 260 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 NEDD9Q14511 834 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 XRRA1Q6P2D8 792 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 TRAF7Q6Q0C0 670 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 APOA5Q6Q788 366 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 CYFIP1Q7L576 1253 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms