RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ARRDC4Q8NCT1 418 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 CYP2W1Q8TAV3 490 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 CDHR1Q96JP9 859 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 FOXP1Q9H334 677 aaPredicted RBP22.03■■□□□ 1.12
UPF1-209ENST00000600310 SYNRGQ9UMZ2 1314 aa22.03■■□□□ 1.12
UPF1-209ENST00000600310 FAM86B1E9PN63 330 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 MEIS1O00470 390 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 DYNC1LI2O43237 492 aaPredicted RBP22.02■■□□□ 1.12
UPF1-209ENST00000600310 FAM86B2P0C5J1 330 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 PTGS1P23219 599 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 MTMR1Q13613 665 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 INF2Q27J81 1249 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 EARS2Q5JPH6 523 aaKnown RBP22.02■■□□□ 1.12
UPF1-209ENST00000600310 LARP1BQ659C4 914 aaKnown RBP22.02■■□□□ 1.12
UPF1-209ENST00000600310 ANKLE1Q8NAG6 615 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 KLHDC9Q8NEP7 349 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 COPS5Q92905 334 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 AP5M1Q9H0R1 490 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 SPC25Q9HBM1 224 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 FOXD4L1Q9NU39 408 aa22.02■■□□□ 1.12
UPF1-209ENST00000600310 KIAA0100Q14667 2235 aaKnown RBP22.02■■□□□ 1.11
UPF1-209ENST00000600310 CTAGE5O15320 804 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 GH1P01241 217 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 SP2Q02086 613 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 LRRC41Q15345 812 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 RNF180Q86T96 592 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 OR6J1Q8NGC5 347 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 SENP7Q9BQF6 1050 aa22.01■■□□□ 1.11
UPF1-209ENST00000600310 IGLV3-22A0A075B6J6 115 aa22■■□□□ 1.11
UPF1-209ENST00000600310 H3BQV1 296 aa22■■□□□ 1.11
UPF1-209ENST00000600310 DNM1LO00429 736 aa22■■□□□ 1.11
UPF1-209ENST00000600310 C6orf222P0C671 652 aaPredicted RBP22■■□□□ 1.11
UPF1-209ENST00000600310 PDCP20941 246 aa22■■□□□ 1.11
UPF1-209ENST00000600310 UBA1P22314 1058 aaKnown RBP22■■□□□ 1.11
UPF1-209ENST00000600310 CST5P28325 142 aaPredicted RBP22■■□□□ 1.11
UPF1-209ENST00000600310 MNX1P50219 401 aaPredicted RBP22■■□□□ 1.11
UPF1-209ENST00000600310 ARHGAP1Q07960 439 aa22■■□□□ 1.11
UPF1-209ENST00000600310 MOXD1Q6UVY6 613 aa22■■□□□ 1.11
UPF1-209ENST00000600310 NEK8Q86SG6 692 aa22■■□□□ 1.11
UPF1-209ENST00000600310 PLA2G4DQ86XP0 818 aa22■■□□□ 1.11
UPF1-209ENST00000600310 KCNH7Q9NS40 1196 aa22■■□□□ 1.11
UPF1-209ENST00000600310 PDE4DIPQ5VU43 2346 aa22■■□□□ 1.11
UPF1-209ENST00000600310 CYP3A7-CYP3A51PA0A087WV96 503 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 MYADML2A6NDP7 307 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 FAM205CA6NFA0 338 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 HSP90AA1P07900 732 aaKnown RBP21.99■■□□□ 1.11
UPF1-209ENST00000600310 ARP10275 920 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 CYP3A7P24462 503 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 U2AF2P26368 475 aaKnown RBP eCLIP21.99■■□□□ 1.11
UPF1-209ENST00000600310 IRX5P78411 483 aaPredicted RBP21.99■■□□□ 1.11
UPF1-209ENST00000600310 SETQ01105 290 aaPredicted RBP21.99■■□□□ 1.11
UPF1-209ENST00000600310 NEDD9Q14511 834 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 CELF3Q5SZQ8 465 aaKnown RBP21.99■■□□□ 1.11
UPF1-209ENST00000600310 EMID1Q96A84 441 aaPredicted RBP21.99■■□□□ 1.11
UPF1-209ENST00000600310 MBOAT7Q96N66 472 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 KIAA1217Q5T5P2 1943 aa21.99■■□□□ 1.11
UPF1-209ENST00000600310 ATP9AO75110 1047 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 GGPS1O95749 300 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 KCNA2P16389 499 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 LAMC2Q13753 1193 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 BECN1Q14457 450 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 FSCN1Q16658 493 aaKnown RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 PRR16Q569H4 304 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 GNASQ5JWF2 1037 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 MYSM1Q5VVJ2 828 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 CCSAPQ6IQ19 270 aaPredicted RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 DHX37Q8IY37 1157 aaKnown RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 GIMAP8Q8ND71 665 aaPredicted RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 LENG9Q96B70 501 aa21.98■■□□□ 1.11
UPF1-209ENST00000600310 TSEN34Q9BSV6 310 aaKnown RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 AGO4Q9HCK5 861 aaKnown RBP21.98■■□□□ 1.11
UPF1-209ENST00000600310 KIF28PB7ZC32 967 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 FARP2O94887 1054 aaPredicted RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 TDP2O95551 362 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 MYCNP04198 464 aaPredicted RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 GCFC2P16383 781 aaKnown RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 GNL2Q13823 731 aaKnown RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 LETM2Q2VYF4 491 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 Q4G0T1 1027 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 PPP4R3AQ6IN85 833 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 METTL7BQ6UX53 244 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 UBE2Q1Q7Z7E8 422 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 NOSTRINQ8IVI9 506 aa21.97■■□□□ 1.11
UPF1-209ENST00000600310 PCSK9Q8NBP7 692 aaKnown RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 NAP1L4Q99733 375 aaKnown RBP21.97■■□□□ 1.11
UPF1-209ENST00000600310 A6NJR5 290 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 KBTBD13C9JR72 458 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 SYT1P21579 422 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 CPT1AP50416 773 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 BEX3Q00994 111 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 AFG1LQ8WV93 481 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 BCAS3Q9H6U6 928 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 MLXIPQ9HAP2 919 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 MYH7BA7E2Y1 1941 aa21.96■■□□□ 1.11
UPF1-209ENST00000600310 FRMPD3Q5JV73 1810 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 ZEB2O60315 1214 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 KCNA10Q16322 511 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 BRDTQ58F21 947 aaPredicted RBP21.95■■□□□ 1.1
UPF1-209ENST00000600310 MCTP1Q6DN14 999 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 CYFIP1Q7L576 1253 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms