RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	GAP43	P17677	238 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP1A2	P50993	1020 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GUCY2F	P51841	1108 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SKOR1	P84550	965 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	RASSF7	Q02833	373 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ARID5A	Q03989	594 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	IFT88	Q13099	833 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MTF1	Q14872	753 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP1R7	Q15435	360 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC6	Q16204	474 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NTRK3	Q16288	839 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	INF2	Q27J81	1249 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	HERC4	Q5GLZ8	1057 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FOXR2	Q6PJQ5	311 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TPTE2	Q6XPS3	522 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM43B	Q6ZT52	329 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NLRP14	Q86W24	1093 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SMYD4	Q8IYR2	804 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	DAGLB	Q8NCG7	672 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	IWS1	Q96ST2	819 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PNKP	Q96T60	521 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	KLHL14	Q9P2G3	628 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PASK	Q96RG2	1323 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CRYBG1	Q9Y4K1	1723 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TESPA1	A2RU30	521 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM187A	A6NFU0	413 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CYP27B1	O15528	508 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MOCS3	O95396	460 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GGPS1	O95749	300 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM107A	O95990	144 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MDH1	P40925	334 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GYS2	P54840	703 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CASP7	P55210	303 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	POLR2F	P61218	127 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP2R2A	P63151	447 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP2B2	Q01814	1243 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	IRF5	Q13568	498 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	RASGRF1	Q13972	1273 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SPDYC	Q5MJ68	293 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SWT1	Q5T5J6	900 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC174	Q6PII3	467 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	C1orf131	Q8NDD1	294 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SLC17A8	Q8NDX2	589 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SPATA20	Q8TB22	786 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NEK9	Q8TD19	979 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SETDB2	Q96T68	719 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MMS19	Q96T76	1030 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PANK4	Q9NVE7	773 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	INTU	Q9ULD6	942 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	XIRP1	Q702N8	1843 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	LTN1	O94822	1766 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GRXCR2	A6NFK2	248 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790		H3BQF6	201 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	HIP1R	O75146	1068 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PRDM1	O75626	825 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SASH3	O75995	380 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FOS	P01100	380 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	AFP	P02771	609 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PLCG1	P19174	1290 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FECH	P22830	423 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CHRND	Q07001	517 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	EHHADH	Q08426	723 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PDIA5	Q14554	519 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GRM4	Q14833	912 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	EXOC3L4	Q17RC7	722 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SBK1	Q52WX2	424 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PDXDC1	Q6P996	788 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SH3RF1	Q7Z6J0	888 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NBPF5P	Q86XG9	351 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	RHOT2	Q8IXI1	618 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ENAH	Q8N8S7	591 aa	Predicted RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	RPGR	Q92834	1020 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ANKRD27	Q96NW4	1050 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	DNAI2	Q9GZS0	605 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	VAT1L	Q9HCJ6	419 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	KLC4	Q9NSK0	619 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GJB4	Q9NTQ9	266 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	INTS9	Q9NV88	658 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PLAGL2	Q9UPG8	496 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PLAA	Q9Y263	795 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SYNGAP1	Q96PV0	1343 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	AFDN	P55196	1824 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TLDC2	A0PJX2	215 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	KLRF2	D3W0D1	207 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FOXN1	O15353	648 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP2C2	O75185	946 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	LMNA	P02545	664 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TEC	P42680	631 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PDE6C	P51160	858 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SARNP	P82979	210 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CAV1	Q03135	178 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NR1H3	Q13133	447 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ADAM9	Q13443	819 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	DHX34	Q14147	1143 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MEA1	Q16626	185 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GPATCH4	Q5T3I0	446 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	WDR78	Q5VTH9	848 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP1R21	Q6ZMI0	780 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TMEM139	Q8IV31	216 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms