RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 USP28Q96RU2 1077 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 FTOQ9C0B1 505 aaKnown RBP eCLIP17.21■□□□□ 0.35
ATG4D-211ENST00000589753 KCNH7Q9NS40 1196 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 TFIP11Q9UBB9 837 aaKnown RBP17.21■□□□□ 0.35
ATG4D-211ENST00000589753 CFAP45Q9UL16 551 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 CEP131Q9UPN4 1083 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 CLIC4Q9Y696 253 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 MRVI1Q9Y6F6 885 aa17.21■□□□□ 0.35
ATG4D-211ENST00000589753 SPATA31C2B4DYI2 1134 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 BMP15O95972 392 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 CEBPZQ03701 1054 aaKnown RBP17.2■□□□□ 0.34
ATG4D-211ENST00000589753 TRIM32Q13049 653 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 TAPT1Q6NXT6 567 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 KCNV1Q6PIU1 500 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 SCFD2Q8WU76 684 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 TNPO1Q92973 898 aaKnown RBP17.2■□□□□ 0.34
ATG4D-211ENST00000589753 PRDM10Q9NQV6 1147 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 PDGFCQ9NRA1 345 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 POLR3EQ9NVU0 708 aa17.2■□□□□ 0.34
ATG4D-211ENST00000589753 KIAA1217Q5T5P2 1943 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 RBM47A0AV96 593 aaKnown RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 TBX3O15119 743 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 MSH4O15457 936 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 MARCH6O60337 910 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 ZNF865P0CJ78 1059 aaPredicted RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 TGFB3P10600 412 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 CYBAP13498 195 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 PRKAR2AP13861 404 aaKnown RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 NCLP19338 710 aaKnown RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 KRT85P78386 507 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 CACNB2Q08289 660 aaPredicted RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 PTGDRQ13258 359 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 SEMA3FQ13275 785 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 TTLL4Q14679 1199 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 PKN2Q16513 984 aaKnown RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 CALCRLQ16602 461 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 ETNPPLQ8TBG4 499 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 ZNF577Q9BSK1 485 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 AGO4Q9HCK5 861 aaKnown RBP17.19■□□□□ 0.34
ATG4D-211ENST00000589753 KCNMB3Q9NPA1 279 aa17.19■□□□□ 0.34
ATG4D-211ENST00000589753 IPO5O00410 1097 aaKnown RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 LAD1O00515 517 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 BAG4O95429 457 aaKnown RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 INHAP05111 366 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 OR52Z1P0C646 297 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 TXNP10599 105 aaKnown RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 ADCYAP1R1P41586 468 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 NASPP49321 788 aaPredicted RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 PTPAQ15257 358 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 CCDC144BQ3MJ40 725 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 IQSEC1Q6DN90 963 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 FBXO46Q6PJ61 603 aaPredicted RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 SLFN12Q8IYM2 578 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 C4orf32Q8N8J7 132 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 TRPV1Q8NER1 839 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 CHAMP1Q96JM3 812 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 FAM20AQ96MK3 541 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 MTMR9Q96QG7 549 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 UIMC1Q96RL1 719 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 TMEM60Q9H2L4 133 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 PKD2L1Q9P0L9 805 aa17.18■□□□□ 0.34
ATG4D-211ENST00000589753 DDX41Q9UJV9 622 aaKnown RBP17.18■□□□□ 0.34
ATG4D-211ENST00000589753 ATP9AO75110 1047 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 ARIH2O95376 493 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 YEATS4O95619 227 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 ATP2C1P98194 919 aaPredicted RBP17.17■□□□□ 0.34
ATG4D-211ENST00000589753 SLC39A14Q15043 492 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 STK38Q15208 465 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 LY6KQ17RY6 165 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 SLC9C1Q4G0N8 1177 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 MAP3K21Q5TCX8 1036 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 CCDC62Q6P9F0 684 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 LINC00301Q8NCQ3 95 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 SH3TC2Q8TF17 1288 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 HAS1Q92839 578 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 SLC5A5Q92911 643 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 SENP7Q9BQF6 1050 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 FAM184BQ9ULE4 1060 aa17.17■□□□□ 0.34
ATG4D-211ENST00000589753 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.16■□□□□ 0.34
ATG4D-211ENST00000589753 AKR1A1P14550 325 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 KCNA2P16389 499 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 UBA1P22314 1058 aaKnown RBP17.16■□□□□ 0.34
ATG4D-211ENST00000589753 CNGA1P29973 690 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 PRPHP41219 470 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 TXKP42681 527 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 SP2Q02086 613 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 TNFAIP2Q03169 654 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 ITGB3BPQ13352 177 aaPredicted RBP17.16■□□□□ 0.34
ATG4D-211ENST00000589753 NEDD9Q14511 834 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 DUSP28Q4G0W2 176 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 GIMAP8Q8ND71 665 aaPredicted RBP17.16■□□□□ 0.34
ATG4D-211ENST00000589753 GJA10Q969M2 543 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 RIT2Q99578 217 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 SDF4Q9BRK5 362 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 SCAND2PQ9GZW5 306 aaPredicted RBP17.16■□□□□ 0.34
ATG4D-211ENST00000589753 TBC1D22BQ9NU19 505 aa17.16■□□□□ 0.34
ATG4D-211ENST00000589753 NKRFO15226 690 aaKnown RBP eCLIP17.15■□□□□ 0.34
ATG4D-211ENST00000589753 SPTLC2O15270 562 aa17.15■□□□□ 0.34
ATG4D-211ENST00000589753 SEPT4O43236 478 aa17.15■□□□□ 0.34
ATG4D-211ENST00000589753 GAS7O60861 476 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms