RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TGFB3P10600 412 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 BMP1P13497 986 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 PGM5Q15124 567 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 TRIM71Q2Q1W2 868 aaKnown RBP13.79□□□□□ -0.2
LIG3-209ENST00000586435 MYSM1Q5VVJ2 828 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 CYB5R4Q7L1T6 521 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 VSIG10LQ86VR7 867 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 ARNTL2Q8WYA1 636 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 RIOX1Q9H6W3 641 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 CERS4Q9HA82 394 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 PCDHA1Q9Y5I3 950 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 DOCK5Q9H7D0 1870 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 LPXNO60711 386 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 GJB5O95377 273 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 DEFB103AP81534 67 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 TFF2Q03403 129 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 TRDNQ13061 729 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 GRB10Q13322 594 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 GRM4Q14833 912 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 HSDL1Q3SXM5 330 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 CELF3Q5SZQ8 465 aaKnown RBP13.78□□□□□ -0.2
LIG3-209ENST00000586435 TRAF7Q6Q0C0 670 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 EXOC6Q8TAG9 804 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 ALG1Q9BT22 464 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 LMCD1Q9NZU5 365 aa13.78□□□□□ -0.2
LIG3-209ENST00000586435 GGPS1O95749 300 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 MYCLP12524 364 aaPredicted RBP13.77□□□□□ -0.21
LIG3-209ENST00000586435 UBA1P22314 1058 aaKnown RBP13.77□□□□□ -0.21
LIG3-209ENST00000586435 CCND2P30279 289 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 HOXC8P31273 242 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 FRMPD4Q14CM0 1322 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 SKIV2LQ15477 1246 aaKnown RBP13.77□□□□□ -0.21
LIG3-209ENST00000586435 SLC35G1Q2M3R5 365 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 EMSYQ7Z589 1322 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 IL31RAQ8NI17 732 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 KAT6AQ92794 2004 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 SPATA33Q96N06 139 aa13.77□□□□□ -0.21
LIG3-209ENST00000586435 COL4A6Q14031 1691 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 LCHNA4D1U4 455 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 GCOM1H8Y6P7 765 aaPredicted RBP13.76□□□□□ -0.21
LIG3-209ENST00000586435 STAM2O75886 525 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 CYP21A2P08686 494 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 POLR2MP0CAP2 368 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 GSPT1P15170 499 aaKnown RBP13.76□□□□□ -0.21
LIG3-209ENST00000586435 COL9A1P20849 921 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 HOXA13P31271 388 aaPredicted RBP13.76□□□□□ -0.21
LIG3-209ENST00000586435 KCNQ1P51787 676 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 TROAPQ12815 778 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
LIG3-209ENST00000586435 IKBKEQ14164 716 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 MBTPS1Q14703 1052 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 TCTN1Q2MV58 587 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 TTC22Q5TAA0 569 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 KRT40Q6A162 431 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 SPRED2Q7Z698 418 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 SERINC5Q86VE9 423 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 HOMER1Q86YM7 354 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 RUFY2Q8WXA3 655 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 WNT8BQ93098 351 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 PIGSQ96S52 555 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 RAD9AQ99638 391 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 C16orf70Q9BSU1 422 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 ZBED2Q9BTP6 218 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
LIG3-209ENST00000586435 XIRP2A4UGR9 3374 aa13.76□□□□□ -0.21
LIG3-209ENST00000586435 PNMA6FA0A0J9YX94 578 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 ERICH2A1L162 156 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 IFIT3O14879 490 aaKnown RBP13.75□□□□□ -0.21
LIG3-209ENST00000586435 CYTH3O43739 400 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 LGR5O75473 907 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 ICAM3P32942 547 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 ERVK-21P61565 698 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 SP2Q02086 613 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 HIC1Q14526 733 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 SART3Q15020 963 aaKnown RBP13.75□□□□□ -0.21
LIG3-209ENST00000586435 GNPTABQ3T906 1256 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 NECAB3Q96P71 396 aaPredicted RBP13.75□□□□□ -0.21
LIG3-209ENST00000586435 TGS1Q96RS0 853 aaKnown RBP13.75□□□□□ -0.21
LIG3-209ENST00000586435 NLRC5Q86WI3 1866 aa13.75□□□□□ -0.21
LIG3-209ENST00000586435 RALGAPA2Q2PPJ7 1873 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 LINC01553A4QN01 128 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 H3BRB1 525 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 CAND2O75155 1236 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 LGALS2P05162 132 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 PDE4AP27815 886 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 ZNF200P98182 395 aaPredicted RBP13.74□□□□□ -0.21
LIG3-209ENST00000586435 WTAPQ15007 396 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 TMCO2Q7Z6W1 182 aaPredicted RBP13.74□□□□□ -0.21
LIG3-209ENST00000586435 RALYLQ86SE5 291 aaKnown RBP13.74□□□□□ -0.21
LIG3-209ENST00000586435 NCOA7Q8NI08 942 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 GDPD5Q8WTR4 605 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 HLA-CQ95604 372 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 INPP4AQ96PE3 977 aaPredicted RBP13.74□□□□□ -0.21
LIG3-209ENST00000586435 TUT1Q9H6E5 874 aaKnown RBP13.74□□□□□ -0.21
LIG3-209ENST00000586435 MLXIPQ9HAP2 919 aa13.74□□□□□ -0.21
LIG3-209ENST00000586435 C17orf102A2RUQ5 167 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 RSPH10B2B2RC85 870 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 RSPH10BP0C881 870 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 CHMLP26374 656 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms