RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HAS3O00219 553 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 PLEKHA8P1O95397 391 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 MYOGP15173 224 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 KIF5BP33176 963 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 PSEN2P49810 448 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 CELF3Q5SZQ8 465 aaKnown RBP23.66■■□□□ 1.38
SHMT1-209ENST00000582653 C7orf31Q8N865 590 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 SYMPKQ92797 1274 aaKnown RBP23.66■■□□□ 1.38
SHMT1-209ENST00000582653 MTA3Q9BTC8 594 aa23.66■■□□□ 1.38
SHMT1-209ENST00000582653 PARNO95453 639 aaKnown RBP23.65■■□□□ 1.38
SHMT1-209ENST00000582653 HOXD8P13378 290 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-209ENST00000582653 SMARCA1P28370 1054 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 SP2Q02086 613 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 PPP2R2DQ66LE6 453 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 TMTC2Q8N394 836 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 SRBD1Q8N5C6 995 aaKnown RBP23.65■■□□□ 1.38
SHMT1-209ENST00000582653 GPKOWQ92917 476 aaPredicted RBP eCLIP23.65■■□□□ 1.38
SHMT1-209ENST00000582653 RRP36Q96EU6 259 aaKnown RBP23.65■■□□□ 1.38
SHMT1-209ENST00000582653 SLC9A7Q96T83 725 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 SPZ1Q9BXG8 430 aa23.65■■□□□ 1.38
SHMT1-209ENST00000582653 F2P00734 622 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 SELPP16109 830 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 CCND2P30279 289 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 RBL2Q08999 1139 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 MFSD10Q14728 455 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 GPNMBQ14956 572 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 KIAA0753Q2KHM9 967 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 HSDL1Q3SXM5 330 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 PPM1EQ8WY54 764 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 ALG1Q9BT22 464 aa23.64■■□□□ 1.37
SHMT1-209ENST00000582653 CUL9Q8IWT3 2517 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 BAIAP3O94812 1187 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 GGPS1O95749 300 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 IGFBP4P22692 258 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 LIFRP42702 1097 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 SCN5AQ14524 2016 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 DHX38Q92620 1227 aaKnown RBP23.63■■□□□ 1.37
SHMT1-209ENST00000582653 SPATA33Q96N06 139 aa23.63■■□□□ 1.37
SHMT1-209ENST00000582653 SPTBN5Q9NRC6 3674 aaKnown RBP23.63■■□□□ 1.37
SHMT1-209ENST00000582653 hCG_1642624A0A1W2PR95 340 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 STAM2O75886 525 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 ZNF286BP0CG31 522 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 MRPS9P82933 396 aaKnown RBP23.62■■□□□ 1.37
SHMT1-209ENST00000582653 PTK7Q13308 1070 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 USP17L6PQ6QN14 398 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 CCDC82Q8N4S0 544 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 LZTS2Q9BRK4 669 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 BCAS3Q9H6U6 928 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 MLXIPQ9HAP2 919 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 SLC12A7Q9Y666 1083 aa23.62■■□□□ 1.37
SHMT1-209ENST00000582653 KIF28PB7ZC32 967 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 CKBP12277 381 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 GNAQP50148 359 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 LRRC8DQ7L1W4 858 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 HERC6Q8IVU3 1022 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 C16orf70Q9BSU1 422 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 RTEL1Q9NZ71 1219 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 SEC63Q9UGP8 760 aaKnown RBP23.61■■□□□ 1.37
SHMT1-209ENST00000582653 GBF1Q92538 1859 aa23.61■■□□□ 1.37
SHMT1-209ENST00000582653 CXCL10P02778 98 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 CA3P07451 260 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 CALM1P0DP23 149 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 CALM2P0DP24 149 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 CALM3P0DP25 149 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 UBA1P22314 1058 aaKnown RBP23.6■■□□□ 1.37
SHMT1-209ENST00000582653 ICAM3P32942 547 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 CCDC85BQ15834 202 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-209ENST00000582653 TJAP1Q5JTD0 557 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 RNF20Q5VTR2 975 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 RASEFQ8IZ41 740 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 SMARCC2Q8TAQ2 1214 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 ATXN2LQ8WWM7 1075 aaKnown RBP23.6■■□□□ 1.37
SHMT1-209ENST00000582653 TCEANC2Q96MN5 208 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 NEK1Q96PY6 1258 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 PRDM6Q9NQX0 595 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 MYH7BA7E2Y1 1941 aa23.6■■□□□ 1.37
SHMT1-209ENST00000582653 TRIP12Q14669 1992 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-209ENST00000582653 FRMPD4Q14CM0 1322 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 RBAK-RBAKDNI3L0D1 243 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 MEIS2O14770 477 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 CDC45O75419 566 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 POU3F3P20264 500 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-209ENST00000582653 GNPTABQ3T906 1256 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 FANCBQ8NB91 859 aa23.59■■□□□ 1.37
SHMT1-209ENST00000582653 INPP4AQ96PE3 977 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-209ENST00000582653 SPATA31C2B4DYI2 1134 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 PIK3CDO00329 1044 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 NBNO60934 754 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 KCNJ6P48051 423 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 ZNF200P98182 395 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-209ENST00000582653 TRIM71Q2Q1W2 868 aaKnown RBP23.58■■□□□ 1.37
SHMT1-209ENST00000582653 ADCK5Q3MIX3 580 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 CNKSR3Q6P9H4 555 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 MICU3Q86XE3 530 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 CUL5Q93034 780 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 CHD7Q9P2D1 2997 aa23.58■■□□□ 1.37
SHMT1-209ENST00000582653 MYO9BQ13459 2157 aa23.58■■□□□ 1.36
SHMT1-209ENST00000582653 H3BRB1 525 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 EXOSC10Q01780 885 aaKnown RBP23.57■■□□□ 1.36
SHMT1-209ENST00000582653 NEDD9Q14511 834 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms